Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01541 ATGGCGAACAAAATGAGTGTAATGTTTGTCATGGGGTTTTTCATCATAAGCCTCATCTCAGTTACATCTGCAATTTCTGGAACTGCCACTTATTACACAGTTTACAAACCATCTGCATGCTACGGGTACCAAGAGGAGGGCACAATGATAGGTGCTGCAAGCGACGCATTGTATGCGAATGGGGCTGCATGTGGTAAAATGTATAAGATCACATGCACAGGTCCTACCAACCAAGGTGTGCCTCAACCATGCAAGGGTGGGAGTGTTACTGTCAAGATTGTGGATCGTTGCCCTTCCCCCGCTTGCAAATCCACCATTGATCTCTCCCAAGAAGCTTTCTCTGCAATCGCTGACCTCAATGCTGGAAAAATTAACATCGACTACACCCAGATGTGA 396 0.4621 MANKMSVMFVMGFFIISLISVTSAISGTATYYTVYKPSACYGYQEEGTMIGAASDALYANGAACGKMYKITCTGPTNQGVPQPCKGGSVTVKIVDRCPSPACKSTIDLSQEAFSAIADLNAGKINIDYTQM 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01541 131 Pfam Lytic transglycolase 52 128 IPR009009 -
Cca05g01541 131 SUPERFAMILY Barwin-like endoglucanases 13 130 IPR036908 -
Cca05g01541 131 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 2 131 IPR044206 GO:0009627|GO:0048046
Cca05g01541 131 Gene3D - 23 131 IPR036908 -
Cca05g01541 131 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 26 131 IPR007112 -
Cca05g01541 131 SMART dpbb_1 50 128 IPR007112 -
Cca05g01541 131 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN ISOFORM X2 2 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01541 Cca-Chr5 34578609 34580482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01541 49 130 Expansin Gene Family AT2G45110 34.409 1.71e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01541 - - vra:106764512 231.491