Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01538 ATGGCTCCTTCTTCAGATGTTAATCATCTTTCTCATCCTTGCATATACGGGGATTATATTTCTCCACGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTTCTAAGCTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATGGTCTGGGGTGCTCCATCTAGAGCGTTGGATGACCGTGGTAGAGCTCAGAAGGAGAAAGAGGATCTGGGCCATGCAATGGCACTTTCTTCAGCTGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATGGTTGGGGAGAAGACACTGGTGATGATTATTCAAAGGCACTTCAGGATACCCTTAACTCCTCTGCACACCCTCCATATGTAGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATCTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCATCCAAATTGCTTTCGCTGCCACTCTTGTCGTTACCCCATTACAGAGCGTGAGTTTTCATTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATTCTGCTGGTTTGATTGAGTATAGGTGCCACCCATTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGTTGTGAAAGACTGGAGCCACGGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAACAGATACTGGTGATTGCCAGCCCCTTTACCATTCCATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAGCAAATTCCCATGCTTCTCGTTGAAAGAGAAGCACTTAATGAAGCTATTGAAGGGGAAAAGAATGGTTTTCACCACTTACCAGAAACAAGGGGTTTATGTCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACATCAAAAATTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATACGGTCTTCCTAGGTTGCTCACAGGTGCTATACTAGCCCACGAGTTGATGCATGCATGGCTGCGCCTTAAAGGTTACCGCAACCTTAACCCCGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCCTACATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAGGCATGCCATCAACAtccaccgcttcttcctcctcctcctcttcctcAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAAAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTTGTACACTTGACCATATTCAATTGACTGGTTTTTTCCCTGTGTAA 1518 0.4157 MAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESMVWGAPSRALDDRGRAQKEKEDLGHAMALSSAEDLKRPNAHQGYGWGEDTGDDYSKALQDTLNSSAHPPYVAPTPFYPHEYRRICGGCNQEIIYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINSAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAITDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIEGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQHQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQGMPSTSTASSSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRCTLDHIQLTGFFPV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01538 505 MobiDBLite consensus disorder prediction 431 450 - -
Cca05g01538 505 ProSitePatterns LIM zinc-binding domain signature. 143 177 IPR001781 -
Cca05g01538 505 ProSiteProfiles LIM domain profile. 141 201 IPR001781 -
Cca05g01538 505 Gene3D Cysteine Rich Protein 130 200 - -
Cca05g01538 505 CDD LIM_DA1 143 195 - -
Cca05g01538 505 Pfam LIM domain 143 196 IPR001781 -
Cca05g01538 505 MobiDBLite consensus disorder prediction 431 449 - -
Cca05g01538 505 Pfam Protein DA1 292 499 IPR022087 -
Cca05g01538 505 MobiDBLite consensus disorder prediction 43 80 - -
Cca05g01538 505 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 505 - -
Cca05g01538 505 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 168 - -
Cca05g01538 505 SMART lim_4 142 194 IPR001781 -
Cca05g01538 505 PANTHER PROTEIN DA1-RELATED 2 20 505 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01538 Cca-Chr5 34521787 34525489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g01538 DA1-like 5.7e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01538 - - gmx:100784976 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01538 05 34521787 34525489 Cca05g01538 05 34521787 34525489 ECH