Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01536 ATGAGCTCACAGGGGACAGTGATTGATGAGGCTGTTCTTGATGACATAATCCGCCGCTTAACGGAGGTCCGATTGGCCCGACCCGGCAAGCAGGTTCAGCTCTCCGAGTCCGAGATCAAGCAACTCTGCGTCGCTTCCAGAGACATCTTCCTTCAACAGCCCAATTTGCTTGAACTTGAAGCCCCCATCAAGATTTGTGGTGACATTCATGGACAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGGGTTTGCCTCCTAATGCGAATTATCTCTTTTTAGGGGACTATGTGGACCGTGGGAAGCAGAGCTTAGAAACTATATGTCTTTTGCTTGCATATAAAATCAAATATCCAGAAAACTTTTTCCTGTTGAGGGGTAATCACGAGTGTGCTTCCATTAATAGGATTTATGGGTTTTATGATGAATGTAAGCGGAGGTTTAATGTGAGGCTTTGGAAAGCCTTTACCGACTCTTTTAACTGCCTTCCTGTGGCAGCCCTTATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCACAAACTTGGATCAAATCAGGAATCTAATTCGTCCAACTGCAGTTCCGGACACCGGCTTGCTCTGTGATTTGCTTTGGTCTGATCCTGGTAGGGATGTGAAAGGTTGGGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCCGATAAGGTGGCTGAATTTTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGGTTGTAGAGGATGGTTATGAATTCTTCGCCGATAGGCAACTTGTTACAATATTTTCAGCTCCAAACTACTGTGGCGAATTTGACAATGCTGGTGCAATGATGAGTGTGGATGATAACTTGATGTGCTCTTTTCAGATTCTTAAGCCTGCAGAGAAAAAAACAAAGTTTGTGATGTCAAACAAGATGTGA 948 0.442 MSSQGTVIDEAVLDDIIRRLTEVRLARPGKQVQLSESEIKQLCVASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPNANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDSFNCLPVAALIDDKILCMHGGLSPELTNLDQIRNLIRPTAVPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDDNLMCSFQILKPAEKKTKFVMSNKM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01536 315 Pfam Serine-threonine protein phosphatase N-terminal domain 13 60 IPR031675 -
Cca05g01536 315 CDD MPP_PP1_PPKL 12 302 - -
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 91 118 IPR006186 GO:0016787
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 124 148 IPR006186 GO:0016787
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 158 184 IPR006186 GO:0016787
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 187 214 IPR006186 GO:0016787
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 244 264 IPR006186 GO:0016787
Cca05g01536 315 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
Cca05g01536 315 SMART pp2a_7 34 304 IPR006186 GO:0016787
Cca05g01536 315 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 3 308 - -
Cca05g01536 315 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 3 308 - -
Cca05g01536 315 Pfam Calcineurin-like phosphoesterase 62 254 IPR004843 GO:0016787
Cca05g01536 315 ProSitePatterns Serine/threonine specific protein phosphatases signature. 125 130 IPR006186 GO:0016787
Cca05g01536 315 SUPERFAMILY Metallo-dependent phosphatases 22 308 IPR029052 -
Cca05g01536 315 Gene3D - 5 313 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01536 Cca-Chr5 34491140 34497363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01536 63 247 Calmodulin-binding Proteins AT5G63870 32.579 2.29e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01536 K06269 - gmx:100807069 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01536 05 34491140 34497363 Cca05g01536 05 34491140 34497363 ECH