Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01528 ATGGCTGGGATTTGCTGTCGTGTTGTTGGAGAGGCCGGAGAGACTCCCTCTCCGATCGAGCCTACCTCACGCCCTTCCGCTCGCCGGAGTATAGACCTCCTGCCTTTCAAGTACATAGCTGACGTCCCAATCCCGCCGCCGGAGAACACCCGCAAGCGCCAGAAGCTGGACGCCAGCGGTTCTCCGGCGCAGCCGCGGGAGTGCCAAAACGCCGTGGAGAGTTCCGAATCCAAGGGAGTAGTCGAGGCAGTTTCACTTCCGAATACTTCGAAGATTCCTGCGTTTGTCGAGGAGTGCCCGAGGTATGGGGTAACCTCGGTTTGTGGTCGGAGGAGGGACATGGAAGACGCCGTTTCGGTGCATCCCTCGTTTTGCCTCGAAAATCGTTCTCAGGATCAGAAAGGGTTTCATTTCTTCGCTGTTTTCGACGGTCACGGATGCTCGCATGTGGCGACTATGTGCAAGGAGAGATTACACGAGATAGTGAAGGAGGAGGTTGAGAAAGCGAAAGAGGATTTGGACTGGGAAATCACGATGAAGAAGTGTTTCGCTCGCATGGACGAAGAGGTGCAGAGGTGGAGCAAGAGCAAGGAAGCTCCCACTTGCAGGTGCGAGCTTCAGACTCCGCACTGCGACGCCGTCGGCTCCACCGCGGTCGTGGCCGTCGTCACGCCGGACAAGATCATCGTCGCCATAGGCCCAGCGAAAAATTGGGATGACCGTGGTAGAGCTCAGAAGGAGAAAGAGGATCTGGGCCATGCAATGGCACTTTCTTCAGCTGAAGATTTAAAGAGACCAAACGCCCATCAAGGATATAGTTGGGGAGAAGACACCGGTGATGATTACTCAAAGGCACTTCAGGATACCCTTAACTCTTCTGCACACCCTCCATATGTAGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATCTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCATCCAAATTGCTTTCGCTGCCACTCTTGTCGTTACCCCATTACAGAGCGTGAGTTTTCATTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATTCTGCTGGTTTGATTGAGTATAGGTGCCACCCATTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGTTGCTGTAGTTGTGAAAGACTGGAGCCACGGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAACAGATACTGGTGATTGCCAGCCCCTTTACCATTCCATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAGCAAATTCCCATGCTTCTCGTTGAAAGAGAAGCACTTAATGAAGCTATTGAAGGGGAAAAGAATGGTTTTCACCACTTACCAGAAACAAGGGGTTTATGTCTTTCAGAAGAGCAGACTGTCACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACATCAAAAATTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATACGGTCTTCCTAGGTTGCTCACAGGTGCTATACTAGCCCACGAGTTGATGCATGCATGGCTGCGCCTTAAAGGTATattttcatcataa 1725 0.4812 MAGICCRVVGEAGETPSPIEPTSRPSARRSIDLLPFKYIADVPIPPPENTRKRQKLDASGSPAQPRECQNAVESSESKGVVEAVSLPNTSKIPAFVEECPRYGVTSVCGRRRDMEDAVSVHPSFCLENRSQDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEVEKAKEDLDWEITMKKCFARMDEEVQRWSKSKEAPTCRCELQTPHCDAVGSTAVVAVVTPDKIIVAIGPAKNWDDRGRAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKALQDTLNSSAHPPYVAPTPFYPHEYRRICGGCNQEIIYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINSAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAITDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIEGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQHQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGIFSS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01528 574 Pfam Protein phosphatase 2C 101 231 IPR001932 -
Cca05g01528 574 PANTHER PROTEIN DA1-RELATED 2 229 570 IPR045218 -
Cca05g01528 574 Pfam LIM domain 313 366 IPR001781 -
Cca05g01528 574 SMART PP2C_4 89 544 IPR001932 -
Cca05g01528 574 Gene3D Cysteine Rich Protein 300 370 - -
Cca05g01528 574 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 229 570 - -
Cca05g01528 574 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 307 338 - -
Cca05g01528 574 CDD LIM_DA1 313 365 - -
Cca05g01528 574 Pfam Protein DA1 462 571 IPR022087 -
Cca05g01528 574 ProSiteProfiles PPM-type phosphatase domain profile. 101 416 IPR001932 -
Cca05g01528 574 ProSitePatterns PPM-type phosphatase domain signature. 138 146 IPR000222 GO:0043169
Cca05g01528 574 ProSitePatterns LIM zinc-binding domain signature. 313 347 IPR001781 -
Cca05g01528 574 SMART lim_4 312 364 IPR001781 -
Cca05g01528 574 MobiDBLite consensus disorder prediction 42 75 - -
Cca05g01528 574 SUPERFAMILY PP2C-like 99 231 IPR036457 -
Cca05g01528 574 CDD PP2Cc 101 231 IPR001932 -
Cca05g01528 574 Gene3D - 95 232 IPR036457 -
Cca05g01528 574 ProSiteProfiles LIM domain profile. 311 371 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01528 Cca-Chr5 34418469 34427904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01528 1 231 PP2C-type Phosphatase Gene Family AT3G11410 50.617 9.60e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g01528 PP2C 6.3e-16 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01528 - - ccaj:109788045 692.96