Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01519 ATGGTTCGACGTCATTCCAACTGTATGTGTCGGGTGATGCCCGTGACGGTGACGGGCAGGCTGTGTGGCCCCCACTTCTCTCTTCTCCCTCTACAAAAGCTTCTCCCACAACTCCATTTCAATGGATCCTGCGTTTCCTATATCATAACCTTCCTTACTTGTTTCCAATTAATTTTCCCCCTTTTCCACCTTTCAACTTTTCTTAATTCTTATTTTTGTGTCCTAATGGCTGGGATTTGCTGTCGTGTTGTTGGAGAGGCCGGAGAGACTCCCTCTCCGATCGAGCCTACCTCACGCCCTTCCGCTCGCCGGAGTATAGACCTCCTGCCTTTCAAGTACATAGCTGACGTCCCAATCCCGCCGCCGGAGAACACCCGCAAGCGCCAGAAGCTGGACGCCAGCGGTTCTCCGGCGCAGCCGCGGGAGTGCCAAAACGCCGTGGAGAGTTCCGAATCCAAGGGAGTAGTCGAGGCAGTTTCACTTCCGAATACTTCGAAGATTCCTGCGTTTGTCGAGGAGTGCCCGAGGTATGGGGTAACCTCGGTTTGTGGTCGGAGGAGGGACATGGAAGACGCCGTTTCGGTGCATCCCTCGTTTTGCCTCGAAAATCGTTCTCAGGATCAGAAAGGGTTTCATTTCTTCGCTGTTTTCGACGGTCACGGATGCTCGCATGTGGCGACTATGTGCAAGGAGAGATTACACGAGATAGTGAAGGAGGAGGTTGAGAAAGCGAAAGAGGATTTGGACTGGGAAATCACGATGAAGAAGTGTTTCGCTCGCATGGACGAAGAGGTGCAGAGGTGGAGCAAGAGCAAGGAAGCTCCCACTTGCAGGTGCGAGCTTCAGACTCCGCACTGCGACGCCGTCGGCTCCACCGCGGTCGTGGCCGTCGTCACGCCGGACAAGATCATCGTCGCCAACTGCGGCGACTCACGCGCCGTGCTGTGCCGGAACAACGTCGCCGTTCCACTCTCGGACGACCACAAGCCGGATCGTGCGGACGAGTTGGTTCGGATCGAAGGCGCGGGAGGGCGCGTGATATATTGGGATGGGCCTAGAGTGCTTGGAGTGTTGGCCATGTCCAGAGCCATAGGTATAGTATAA 1104 0.5534 MVRRHSNCMCRVMPVTVTGRLCGPHFSLLPLQKLLPQLHFNGSCVSYIITFLTCFQLIFPLFHLSTFLNSYFCVLMAGICCRVVGEAGETPSPIEPTSRPSARRSIDLLPFKYIADVPIPPPENTRKRQKLDASGSPAQPRECQNAVESSESKGVVEAVSLPNTSKIPAFVEECPRYGVTSVCGRRRDMEDAVSVHPSFCLENRSQDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEVEKAKEDLDWEITMKKCFARMDEEVQRWSKSKEAPTCRCELQTPHCDAVGSTAVVAVVTPDKIIVANCGDSRAVLCRNNVAVPLSDDHKPDRADELVRIEGAGGRVIYWDGPRVLGVLAMSRAIGIV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01519 367 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 97 365 - -
Cca05g01519 367 SMART PP2C_4 164 367 IPR001932 -
Cca05g01519 367 ProSiteProfiles PPM-type phosphatase domain profile. 176 367 IPR001932 -
Cca05g01519 367 CDD PP2Cc 176 365 IPR001932 -
Cca05g01519 367 Pfam Protein phosphatase 2C 176 365 IPR001932 -
Cca05g01519 367 ProSitePatterns PPM-type phosphatase domain signature. 213 221 IPR000222 GO:0043169
Cca05g01519 367 PANTHER ALPHABET, ISOFORM E-RELATED 97 365 - -
Cca05g01519 367 Gene3D - 170 367 IPR036457 -
Cca05g01519 367 MobiDBLite consensus disorder prediction 117 150 - -
Cca05g01519 367 SUPERFAMILY PP2C-like 174 366 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01519 Cca-Chr5 34272558 34274959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01519 76 365 PP2C-type Phosphatase Gene Family AT3G11410 57.616 1.74e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01519 K14497 - gmx:100781388 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01519 05 34272558 34274959 Cca05g01519 05 34272558 34274959 ECH
Cca01g00373 01 4306528 4308939 Cca05g01519 05 34272558 34274959 PCT