Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01518 ATGATGGAGGGATCTCAGCACTGGATGCATGTGAAGAGAGAACAAACCCTGAAGCCATACCTTGAAGCAGAAGTTGAAGATGACAATAAGAATTACTCGTGGGAAGAAAGAGCATTTGCTGAAGATGCAGCTAGAATAGTTGGTGGTAGCATGTGGCCTCCAAGATCTTACTCTTGTACATTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCACTTGGGGGTCACATGAATGTCCACAGGAGGGATAGGGCTAGACTCAAACAAAATCTTAGCCCTCACAATAATTATCATGAAAATGAACCCCTTCATCGTCATAACAAAAATGGTTTCAAGTCCTTATTAGGTAATCATTTTTCTGCCTCCACACAGATAGATTGTGGTCTTGCTGCTTATTATTCTAGCCCTGCAACTACAATTGCATCCACCAGACAATTTGAAATTTGTGGTCAGCATAGTTTGTCACCTTATTCTTCTTTTTCTTCAATTATCTTCGGACAGAAAAATAACACGGAATACAAATTTAATGGCTTGGGTTGTGATAATCATGTTGAAACAAGTTTGTCTGTGGGACTTACTTCATCTCCAACCGTTGACAGAGCCAACATCAATTGTAAGAGATGTTCAAAATCAAATGATAAACAACGCTTGGCTTTTCAACCTGAGGAAATCTTACTTGGACTTGATCGTGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACAGAGTTAA 738 0.397 MMEGSQHWMHVKREQTLKPYLEAEVEDDNKNYSWEERAFAEDAARIVGGSMWPPRSYSCTFCKREFRSAQALGGHMNVHRRDRARLKQNLSPHNNYHENEPLHRHNKNGFKSLLGNHFSASTQIDCGLAAYYSSPATTIASTRQFEICGQHSLSPYSSFSSIIFGQKNNTEYKFNGLGCDNHVETSLSVGLTSSPTVDRANINCKRCSKSNDKQRLAFQPEEILLGLDRGMEDLDLELRLGKQQS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01518 245 Pfam C2H2-type zinc finger 57 81 - -
Cca05g01518 245 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Cca05g01518 245 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cca05g01518 245 Gene3D Classic Zinc Finger 53 119 - -
Cca05g01518 245 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 244 - -
Cca05g01518 245 SMART c2h2final6 57 79 IPR013087 -
Cca05g01518 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Cca05g01518 245 PANTHER OS07G0101800 PROTEIN 2 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01518 Cca-Chr5 34256432 34257516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01518 29 108 C2H2 Transcription Factor Family AT2G37740 61.905 5.04e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g01518 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01518 - - lang:109340014 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01518 05 34256432 34257516 Cca01g01705 01 39539540 39545521 ECH
Cca07g01438 07 37623453 37624694 Cca05g01518 05 34256432 34257516 ECH
Cca01g01705 01 39539540 39545521 Cca05g01518 05 34256432 34257516 ECH
Cca05g01518 05 34256432 34257516 Cca05g01518 05 34256432 34257516 ECH
Cca01g00384 01 4480908 4481936 Cca05g01518 05 34256432 34257516 PCT