Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01511 ATGGCGAATCGTTGGTGGGCCGCCAACAGGCCCAATGAACCCAACTCATCGCTTcaccaagacaacgctactccaaccaacagcagcaacagcaactccaacaccaacaACGTTAACGTTAACGCTAACGCTGTTGAGGACGAGGACAACAACAACACCACCACCGACCGTGACCTCGACGACCACAACCTCAGCGCCGGTCGCCGCCCACGTGGCAGGCCTCCGGGCTCCAGAAACAAGCCCAAGCCGCCGGTGGTCATTACCAAAGAGAGCCCCAACGCGCTGCGGAGCCACATCCTCGAAATCAGCTCCGGCAGCGACGTCACCGACTGCATTGCCACCTTCGCCACGCGCCGCCACCGCGGCGTCTCCGTCCTCAGTGGCAGCGGCGTCGTCACCAACGTCACGCTCCGCCAGCCCACGGCCCCAGGCGGGGTCATCAACCTCCAGGGGAGGTTCGAGATCCTCTCGCTCTCCGGCGCGTTCCTGCCGCCGCCCTCGCCGCCGGAGGCCACCGGGCTCACCGTGTACCTGGCCGGCGGGCAGGGGCAGGTCGTCGGCGGCAGCGTGGTGGGGCCGCTGGTGGCCGCGGGGCCGGTCATGGTGGTGGCTGCGACGTTTGCAAATGCTACCTATGAGAGGTTGCCTTTGGAGGATGAACAAGGTGAAGAGGACATGCAAGAGGTGAATGAAGGTGGTGGAACTCCTCCTTCTCAGGGTGAACAACAACAACAGGTTTCAATGCCGGTGTATAATTTGAACCCCAATTTGGTGCCTCAAAATGGTGATGTCTTCTGGTCTCATCTGACGGTTTGTAGCAAGGCAGTTGAGATTTGGGGGGAGATTTGCTGTACTGCACCTGCTACTACTATTTAA 876 0.5731 MANRWWAANRPNEPNSSLHQDNATPTNSSNSNSNTNNVNVNANAVEDEDNNNTTTDRDLDDHNLSAGRRPRGRPPGSRNKPKPPVVITKESPNALRSHILEISSGSDVTDCIATFATRRHRGVSVLSGSGVVTNVTLRQPTAPGGVINLQGRFEILSLSGAFLPPPSPPEATGLTVYLAGGQGQVVGGSVVGPLVAAGPVMVVAATFANATYERLPLEDEQGEEDMQEVNEGGGTPPSQGEQQQQVSMPVYNLNPNLVPQNGDVFWSHLTVCSKAVEIWGEICCTAPATTI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01511 291 MobiDBLite consensus disorder prediction 9 49 - -
Cca05g01511 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 269 IPR014476 GO:0003680
Cca05g01511 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 220 - -
Cca05g01511 291 MobiDBLite consensus disorder prediction 218 244 - -
Cca05g01511 291 MobiDBLite consensus disorder prediction 50 68 - -
Cca05g01511 291 MobiDBLite consensus disorder prediction 1 92 - -
Cca05g01511 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 208 IPR005175 -
Cca05g01511 291 Gene3D - 95 228 - -
Cca05g01511 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 21 269 - -
Cca05g01511 291 CDD DUF296 96 179 IPR005175 -
Cca05g01511 291 ProSiteProfiles PPC domain profile profile. 92 230 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01511 Cca-Chr5 34188876 34190105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01511 68 259 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 66.667 2.43e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01511 - - aprc:113874473 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01511 05 34188876 34190105 Cca05g01511 05 34188876 34190105 ECH
Cca01g00387 01 4518764 4519795 Cca05g01511 05 34188876 34190105 PCT