Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01509 ATGACAGGGCTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCGCCACTGATTGTGTATTCGCTCCTTACTTCTCCTACGACCAAGCCTCAACCCATTTTGCAGCAGTGCACAAAATTTACGGTGCTAGTAACGTCTCCAGGCTATTGTCACATCTTCCAATCCAGAATAGAAGTGATGCTGCCATCACCATTTCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGCCAGCTTACAAGAGGAGATAGATACTCTTGGTAGTCTAATGACAAATTCCACAATCAGTGTTGTCAATTGTGACAGTGTCCAAGCACCAAAGACAATAAGAAGTGCCACAGTTTACCAAAGTTTTGACTCACAGATGGATATGGAGCTTCCTAGTGCACACGTGGAAGAACCTTCATTTGGTGATTCCTACTACAATAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCATGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGAACTAG 570 0.4333 MTGLGSSCGACKFLRRKCATDCVFAPYFSYDQASTHFAAVHKIYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIDTLGSLMTNSTISVVNCDSVQAPKTIRSATVYQSFDSQMDMELPSAHVEEPSFGDSYYNNPLEQFLSGIDQEVFMNHPWFKHNADIKN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01509 189 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Cca05g01509 189 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cca05g01509 189 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 187 - -
Cca05g01509 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01509 Cca-Chr5 34156387 34157605 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01509 1 182 AS2 family AT5G06080 52.459 1.95e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca05g01509 LOB 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01509 K13945 - gmx:100809636 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01509 05 34156387 34157605 Cca05g01509 05 34156387 34157605 ECH