Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01507 ATGGCAAAAACACTCATTCTCCTCTGCTCCATCTTCCTCGTGGCCAAATCCGAAGAGCTTCTCTTCCAAGGCTTTCAATCCGCCGCCACCAACATAACCACAAACGGCGTCGCATCAATCCAACAAAACGGCATCCTGCGTCTCACAAACTCCAACAACCAACTCGGCCACGCCTTCTACTCCACTCCGCTCAAGTTCAAAAACTCCAGCGACGGCGCCGTTTTCTCATTCTCCACGGCTTTCGCCTTCGCCATCACAAACCGCGACCCCAAACACGGTGGCCACGGCTTCGCCTTCACGCTTTCCCCCAGCAAGGACCTCCCCGGCGCCTATTCCGGCCAGTACCTCGGCCTCTTCAAGCCCCACGACGTCGGAAACTCCTCCAACCACCTCTTCGCCGTGGAGTTCGACACCGTCCTGGACTACGAGATTTACGacatcaacaacaaccacgtcggcgtcaacgtcaacaccatcatctccaacaaatcCGTCCCCGCCACCGACGCCTCATCCAAGCAAAGCCTCAGCTTGAAGTCTGGTAAAGTCATTCAAGCATGGCTGGATTACAATTCCTCAGAGAAACAATTCCATGTTAGACTTTCCTTAACCTCGTCCAAGCCCACTTCACCTATCTTGTCTTGCCACCTAGATCTCTCACCCATTCTTCACGACAACATGTACGTCGGCTTTTCAGCTTCAACGGGGTTGCTTGCAAGTTCACACTACATCCTCGGTTGGAGCTTTAAGATGAACCACGGAGAAGCCAAATCTCTTCGTTTGGAAGAGTTACCATCGCTCCCGAGTTATGATAATCACAAAAAGGCCACCGTGTTGGGTGTCATTGTTTCTAGTGCTACCCTGGTAATGATAGTTCTAACCGGGTTAATGGTTTATGTTGTGAGAAAGATGAGAAATGGCGATGTTATTGAACCGTGGGAGCTTGAAGTTGGTCCTCATAGATTCTCGTACGAGGAGCTGAAACAAGCGACAAAGGGGTTCAGAGAGAAACAGTTAATTGGATTCGGAGGCTTCGGAAGAGTTTACAAAGGGGTTCTCCAGGAGTCCAATACAGAAGTAGCGGTGAAGAGAATCACGCAAGATTCGAAGGAAGGGTGGCGACAATTCATGTCGGAGATTGCGACCATTGGTCGGTTACGTCACAGGAACATAGTCCAACTACGAGGATGGTGTCGGAAAAGGTGCGATCTTTTTCTGGTGTATGACTTGATGCCGAATGGGAGTTTGGATAAGTACTTATTCGAGCAACCCCGGAAGATTTTAAGCTGGGAAGAGAGGTTTAAGATTATAAAAGGCGTGGCTTGGGGTTTGGTTTATTTGCATCAAGAATGGGAGCAAGCGGTGATTCACAGAGATATAAAAGCTGGGAACGTGTTGTTGGACAGTGAGATGAATGGGAGGCTCGGAGATTTCGGTTTGGCCAAGATGTACGGACACGGGGAGAATCCCAACACCACGCGCGTGGTCGGCACGTTGGGGTACTTGGCGCCGGAGTTGACGCGGACGGGGAAGCCCACGGCGAGTTCCGACGTGTTTGCGTTTGGGGCTTTGTTGTTGGAGGTGGCGTGCGGGAGGAGGCCGTTCGAGCCCAAGGCGTTGCCGGAGGAGCTCATTCTGGTGGATTGGGTGCGGGAGCGGTGGCGCGTGGGGAGGGCTTGGGAGGTTGTGGATGGGAACCTGGGTGGCGTGTTTGATGTGGGCCAGGCTTTGTTGGTGCTGCGATTGGGCCTCTTGTGCTCCAAGGACGGCCCAGAGGAGCGGCCCAGTATGAGGCAGGTGGTGATGTGCTTGGAGGGGGAGATGCGGTTTCCCGATGAATCGTGTACGACGACGTTTTATGATAGGGTTAGCACGTGGTCTTGTTCCCCAGAGGATGTTGATGCTTCCTCGCTTTCACTCTCCGGTGACTAG 1932 0.5129 MAKTLILLCSIFLVAKSEELLFQGFQSAATNITTNGVASIQQNGILRLTNSNNQLGHAFYSTPLKFKNSSDGAVFSFSTAFAFAITNRDPKHGGHGFAFTLSPSKDLPGAYSGQYLGLFKPHDVGNSSNHLFAVEFDTVLDYEIYDINNNHVGVNVNTIISNKSVPATDASSKQSLSLKSGKVIQAWLDYNSSEKQFHVRLSLTSSKPTSPILSCHLDLSPILHDNMYVGFSASTGLLASSHYILGWSFKMNHGEAKSLRLEELPSLPSYDNHKKATVLGVIVSSATLVMIVLTGLMVYVVRKMRNGDVIEPWELEVGPHRFSYEELKQATKGFREKQLIGFGGFGRVYKGVLQESNTEVAVKRITQDSKEGWRQFMSEIATIGRLRHRNIVQLRGWCRKRCDLFLVYDLMPNGSLDKYLFEQPRKILSWEERFKIIKGVAWGLVYLHQEWEQAVIHRDIKAGNVLLDSEMNGRLGDFGLAKMYGHGENPNTTRVVGTLGYLAPELTRTGKPTASSDVFAFGALLLEVACGRRPFEPKALPEELILVDWVRERWRVGRAWEVVDGNLGGVFDVGQALLVLRLGLLCSKDGPEERPSMRQVVMCLEGEMRFPDESCTTTFYDRVSTWSCSPEDVDASSLSLSGD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01507 643 Gene3D - 18 253 - -
Cca05g01507 643 SUPERFAMILY Protein kinase-like (PK-like) 316 624 IPR011009 -
Cca05g01507 643 PANTHER - 7 623 - -
Cca05g01507 643 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Cca05g01507 643 CDD STKc_IRAK 340 606 - -
Cca05g01507 643 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01507 643 Pfam Legume lectin domain 19 263 IPR001220 GO:0030246
Cca05g01507 643 SMART serkin_6 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01507 643 CDD lectin_legume_LecRK_Arcelin_ConA 22 253 IPR001220 GO:0030246
Cca05g01507 643 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 257 IPR013320 -
Cca05g01507 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Cca05g01507 643 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 7 623 - -
Cca05g01507 643 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Cca05g01507 643 Gene3D Transferase(Phosphotransferase) domain 1 411 621 - -
Cca05g01507 643 Pfam Protein kinase domain 334 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01507 Cca-Chr5 34138565 34140889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01507 18 621 Receptor kinase-like Gene Family AT3G55550 56.607 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca05g01507 Pkinase 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01507 - - mnt:21408055 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01507 05 34138565 34140889 Cca01g01700 01 39362813 39365337 ECH
Cca07g01430 07 37429307 37432626 Cca05g01507 05 34138565 34140889 ECH
Cca01g01700 01 39362813 39365337 Cca05g01507 05 34138565 34140889 ECH
Cca05g01507 05 34138565 34140889 Cca05g01507 05 34138565 34140889 ECH