Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01505 ATGACAGGGCTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCGCCACTGATTGTGTATTCGCTCCTTACTTCTCCTACGACCAAGCCTCAACCCATTTTGCAGCAGTGCACAAAATTTACGGTGCTAGTAACGTCTCCAGGCTATTGTCACATCTTCCAATCCAGAATAGAAGTGATGCTGCCATCACCATTTCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGCCAGCTTACAAGAGGAGATAGATACTCTTGGTAGTCTAATGACAAATTCCACAATCAGTGTTGTCAATTGTGACAGTGTCCAAGCACCAAAGAACTCAAACAACGGAACACAATATAATATTTTGCAGCATGATGCTACAAGGACACAATATTGTCAAAATAATAATCTGGCTAATTTTCTGTCACAAGAAGGAAGTGCCACAGTTTACCAAAGTTTTGACTCACAGATGGATATGGAGCTTCCTAGTGCACACGTGGAAGAAccttcatttgtacttgctactagccGTCTGGGCATCGGTCAAAGCAGCCAATGCCGATCTCAAGAAGGAAGTGCCACAGTTTACCAAAGTTTTGACTCACAGATGGATATGGAGCTTCCTAGTGCACACGTGGAAGAACCTTCATTTGGTGATTCCTACTACAATAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCATGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGAACTAG 801 0.4157 MTGLGSSCGACKFLRRKCATDCVFAPYFSYDQASTHFAAVHKIYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIDTLGSLMTNSTISVVNCDSVQAPKNSNNGTQYNILQHDATRTQYCQNNNLANFLSQEGSATVYQSFDSQMDMELPSAHVEEPSFVLATSRLGIGQSSQCRSQEGSATVYQSFDSQMDMELPSAHVEEPSFGDSYYNNPLEQFLSGIDQEVFMNHPWFKHNADIKN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01505 266 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cca05g01505 266 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 263 - -
Cca05g01505 266 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 263 - -
Cca05g01505 266 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01505 Cca-Chr5 34108078 34109404 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01505 1 114 AS2 family AT5G06080 71.930 7.36e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca05g01505 LOB 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01505 K13945 - gmx:100787638 327.791