Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01504 ATGGCTTCAAACTCACACAACAATAACAAGGAAAACTCAAATTCCTCTTGGACACGCATGCAGAACAAGCAATTCGAAAGAGCACTTGCCTTGTATGATCGAGACACCCCAGATCGATGGCAAAACATAGCCAAAGTGGTTGGTGATAAATCAGCTGAGGAAGTTAAGAGACACTATGAAATCCTTTTGGAGGACCTTAGCCATATTGAGTCTGGACGTGTTCCAATTCCCACTTATAAATCCAATCAAGAGAGGCCCCTCAAATATCTTAATCAGCAATGA 282 0.4184 MASNSHNNNKENSNSSWTRMQNKQFERALALYDRDTPDRWQNIAKVVGDKSAEEVKRHYEILLEDLSHIESGRVPIPTYKSNQERPLKYLNQQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01504 93 SUPERFAMILY Homeodomain-like 16 69 IPR009057 -
Cca05g01504 93 Pfam Myb-like DNA-binding domain 15 59 IPR001005 -
Cca05g01504 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 82 IPR044636 GO:0003700
Cca05g01504 93 CDD SANT 17 63 IPR001005 -
Cca05g01504 93 SMART sant 13 65 IPR001005 -
Cca05g01504 93 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g01504 93 Gene3D - 8 76 - -
Cca05g01504 93 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Cca05g01504 93 PANTHER PROTEIN RADIALIS-LIKE 3 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01504 Cca-Chr5 34086608 34089824 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g01504 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01504 - - gmx:100788168 160.999