Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01500 ATGCACAACTTCAACCCTTCCACTCTTCCTCTCTCTAACTCATACGTACATACCCCTCCCGCCACCTATATACCATACCATACCATACCACATACACGTACACGTATACGTAAATTCGTATCTTCACAGAGTATGTCTTCCCATTGGTGTTACCGCTGCAACAAATTCATCAGAGCATGGAGACAAGAAATGCCGGTATGTCCCGATTGCGACAGCGGATTCGTCGAAGAGGTAATCGAACCATCCAACCCCGCGGTCGAGACCCGCCGCCGTAGGTTCCCGACTGCGGCGGCGATGTACATGATCGGCCACCGCGGCTCCGATCACAACCCTCGCTCCTCCCGCCGCCAGCATTGCAGGACAACCGCCTCGGACCGCTCACCGTTGAATCCGGTCATCATGCTCCGCGGCGAGGGGACGAGCCGCGACCGCCGCACCGGCTTCGACCTTTTCTACGACGACGGCGCCGGCGCCGGAATCCGCCCCCTGCCTCCGAGGATGTCGGAGTTTCTCCTGGGAACAGGCTTCGAGCGCGTGATGGAGCAGCTTTCCCACGTGGAGTCCAGCAACGGCGGCGGGGGCCACGAGCGGAGCCAGGCGCCGGCGTCGAAAGCCGCCGTGGAGGGCCTCCCGGCGATTGAGATAAACGAGACGCACACGGCGATAGAATCTCACTGCGCGGTGTGCAAGGAGGCTTTTGAGGTTTGCACGATGGCAAAGGAAATGCCATGCAAGCACATTTACCACCCCGAGTGTATCTTACCGTGGCTGGCGATACGAAACTCGTGCCCCGTGTGTCGGCACGAGTTGCCGTGCGAGAGCGCACGTGCGAGGCTGGAGCGTGTggaggaggaggaggaggaggagAACTTGGGGTTGACGATCTGGCGGTTACCCGGGGGAGGGTTTGCGGTGGGGAGGTTCGGGAGAAGGGGTGGTGGTGAGGCAGATCTTGACGTTCCTCTTGTTTACACGGAGGTGGATGGTGGGTTTAACAACGTTGTTGGGGAACCTAGGAGGGTTTCGTGGTCGGTTTCCGAGTCTAGAGGGAGGACAAGAGGTGGTGCCTTTCGGAGGATGTTTGGTGGTTTGTTTCGTTGCTTGGGGGGTGGGGTTAGGGCTCATACTTCTTCTAGATCTGTCGATGCTATAGACATTTCCACAAGTGGGAGGAGTGCTATTATTACTCGATCTAATTCTAATAATAACGTCcttcttcctccttcttcttcttctCCACCCTCGCGTAGGACTTGGTCTATGGAAGTCAACGGTGGAACCAGACTATGGTAA 1293 0.553 MHNFNPSTLPLSNSYVHTPPATYIPYHTIPHTRTRIRKFVSSQSMSSHWCYRCNKFIRAWRQEMPVCPDCDSGFVEEVIEPSNPAVETRRRRFPTAAAMYMIGHRGSDHNPRSSRRQHCRTTASDRSPLNPVIMLRGEGTSRDRRTGFDLFYDDGAGAGIRPLPPRMSEFLLGTGFERVMEQLSHVESSNGGGGHERSQAPASKAAVEGLPAIEINETHTAIESHCAVCKEAFEVCTMAKEMPCKHIYHPECILPWLAIRNSCPVCRHELPCESARARLERVEEEEEEENLGLTIWRLPGGGFAVGRFGRRGGGEADLDVPLVYTEVDGGFNNVVGEPRRVSWSVSESRGRTRGGAFRRMFGGLFRCLGGGVRAHTSSRSVDAIDISTSGRSAIITRSNSNNNVLLPPSSSSPPSRRTWSMEVNGGTRLW 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01500 430 SUPERFAMILY RING/U-box 207 271 - -
Cca05g01500 430 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 46 367 - -
Cca05g01500 430 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Cca05g01500 430 MobiDBLite consensus disorder prediction 108 122 - -
Cca05g01500 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 273 IPR013083 -
Cca05g01500 430 MobiDBLite consensus disorder prediction 104 133 - -
Cca05g01500 430 Pfam zinc-ribbon 47 77 IPR039525 GO:0061630
Cca05g01500 430 Coils Coil 272 292 - -
Cca05g01500 430 MobiDBLite consensus disorder prediction 399 422 - -
Cca05g01500 430 Pfam Ring finger domain 225 267 IPR001841 -
Cca05g01500 430 Pfam Protein of unknown function (DUF1117) 292 393 IPR010543 -
Cca05g01500 430 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 367 - -
Cca05g01500 430 SMART ring_2 226 266 IPR001841 -
Cca05g01500 430 MobiDBLite consensus disorder prediction 399 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01500 Cca-Chr5 34040572 34042668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01500 133 273 C3H Transcription Factor Family AT5G01980 35.461 2.53e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01500 - K11982 gmx:100789228 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01500 05 34040572 34042668 Cca05g01500 05 34040572 34042668 ECH