Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01493 ATGCCTTCGCTCGCACTTTCCCTCATCGCCATTGCTTTCATAACCCTCCTCACTCCTTCGGAGGGGAGAATCCCGGGAGTCTACAGCGGCGGCGCGTGGGAGAGCGCGCACGCCACGTTCTACGGGGGGAGCGACGCCTCGGGGACAATGGGAGGCGCCTGCGGCTACGGGAACCTCTACAGCCAGGGCTATGGCGTCAACACGGCGGCGCTCAGCACGGCGCTCTTCAACAACGGGCTGAGCTGCGGTGCGTGCTTCGAGATAAAGTGCGCCGACGACCCCAGCTGGTGCCACGCCGGCAGCCCCTCGATACTGATAACCGCCACCAACTTCTGCCCTCCAAACTACGCTCTCCCCAGCGACAATGGAGGCTGGTGCAACCCTCCCAGACCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATAGCACAGTACCGCGCCGGCATCGTCCCTGTTTCTTACCGCAGGGTACCTTGCCGGAAGCAGGGAGGGATAAGGTTCACGATCAACGGCTTCCGTTACTTCAACTTGGTTTTGATCACGAACGTGGCGGGTGCAGGGGATATCGTGAGGACGAGCGTGAAAGGGTCAAAGACTGGGTGGATGAGCATGAGCCGGAACTGGGGTCAGAACTGGCAGTCAAACGCTGTTCTGGTTGGTCAGTCACTTTCCTTCAGGGTCACAGCCAGTGACCGACGCACCTCCACCTCCTGGAACATTGTTCCCGCCAGTTGGCAATTTGGACAAACCTTCACCGGCAAAAATTTCAGGGTCTAA 780 0.5962 MPSLALSLIAIAFITLLTPSEGRIPGVYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCADDPSWCHAGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPASWQFGQTFTGKNFRV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01493 259 PANTHER EXPANSIN-A15 10 258 IPR002963 GO:0009664
Cca05g01493 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cca05g01493 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cca05g01493 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cca05g01493 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cca05g01493 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cca05g01493 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cca05g01493 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cca05g01493 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Cca05g01493 259 Gene3D - 22 161 IPR036908 -
Cca05g01493 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cca05g01493 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cca05g01493 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cca05g01493 259 PANTHER EXPANSIN-A4 10 258 - -
Cca05g01493 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cca05g01493 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cca05g01493 259 Gene3D - 165 257 IPR036749 -
Cca05g01493 259 SMART dpbb_1 68 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01493 Cca-Chr5 33883767 33885180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01493 3 259 Expansin Gene Family AT2G39700 84.047 8.13e-167 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01493 - - gmx:100809018 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01493 05 33883767 33885180 Cca01g01681 01 38551360 38553841 ECH
Cca07g01399 07 36725310 36728573 Cca05g01493 05 33883767 33885180 ECH
Cca10g00408 10 4249084 4250053 Cca05g01493 05 33883767 33885180 ECH
Cca04g00637 04 6294682 6296736 Cca05g01493 05 33883767 33885180 ECH
Cca05g01493 05 33883767 33885180 Cca05g01493 05 33883767 33885180 ECH