Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01487 ATGGCAATTGGGTTCATGGAGGTGAAGCTGGTGAAAGCAAAGGGTCTTCAAGGAACTGATCTCTTTGCTCGTATGGATCCGTATGTCCTGTTACAATACAAAGGTCAAGAGCGCAAGAGCAGAGTAATTCATGAAGGGGGAAGCAATCCAGTATGGAATGAGAAATTTGTATTCAGAGTCGAATACCCTGGATCAGGTGACCAATACAAGCTCAACCTTAGAATCATGGATAAGGATGTATTTTCTGCAGATGACTTTGTTGGCCAGGCTACAATCTATGTGAAGGATTTATTGGCAGAAGGAGCAGAGAATGGATCAGCTGAGCTTCGTCCTCAAAAGTATAGTGTGGTTCGAGCTGACCAATCTTATTACGGCGAAATTGAAGTTGGTATAACTTTCACCCGAAAGGAAGAGGAATTTAATGATGATGATGTTGGAGGATGGAAGGAAAGTTGCTTTTAG 462 0.4242 MAIGFMEVKLVKAKGLQGTDLFARMDPYVLLQYKGQERKSRVIHEGGSNPVWNEKFVFRVEYPGSGDQYKLNLRIMDKDVFSADDFVGQATIYVKDLLAEGAENGSAELRPQKYSVVRADQSYYGEIEVGITFTRKEEEFNDDDVGGWKESCF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01487 153 PANTHER C2 DOMAIN-CONTAINING 1 152 - -
Cca05g01487 153 SMART C2_3c 5 106 IPR000008 -
Cca05g01487 153 Pfam C2 domain 6 105 IPR000008 -
Cca05g01487 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Cca05g01487 153 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Cca05g01487 153 PANTHER ELICITOR-RESPONSIVE PROTEIN 1 1 152 - -
Cca05g01487 153 Gene3D C2 domain 2 135 IPR035892 -
Cca05g01487 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01487 Cca-Chr5 33808610 33811172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01487 3 109 C2H2 Transcription Factor Family AT4G21160 30.841 2.15e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01487 - - gmx:100500493 290.041