Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01486 ATGCTGGCGCTACTTCAGCACTGCACCATCTCCATGCCCCTCGCACGTGCGCTGCGCCCTCCCCCTCCTACGCACGTGCGACCTTGTTTCACGGCCATGGTCCACGCACCCGTTTCCCCGCGCGCCAACTCCGACTCTCAGGTTCTCCTCGGCTTGTCCGAGAAGAAGCTGCAACAGCTTGCAATTGACTTTGGTCAGGAAAGCTACAGGGGAAAACAACTTTATCATTTTATATACCAGAGGAAGGTCAAAGAAATTCAGGATTTCTCTCAGTTGCCTTTGGGGTTTAGGAAAGCTCTTGAGAAAGCTGGATGGAAGGTGGGGCGCTCTCCTATTTTCCAAACTGTTACTGCAGCTGATGGAACTGTTAAGTTGTTGTTAAAGTTGGAGGACAATAGATTGATTGAAACAGTTGGCATTCCGGTTATGGCTGATGATTGTGTGACTCGCCTCACAGCATGTGTCTCATCACAGGTTGGTTGCCCTTTACGCTGCTCTTTTTGTGCTACTGGGAAAGGGGGGTTTTCAAGGAATCTCAAGGCACACGAAATCGTTGAACAGGTCTTGGCCATCGAGGAGGTCTTCAAGCGCAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAGGATGTGCGAATTGGGCAAAGAATGATTACCATCTCCACTGTGGGTGTTCCAAATACAATAAAGAAACTTGCTTCTTGTAAACTTCAATCTACTTTAGCTGTGAGCTTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTACCCGCTGGATGCACTTATGACAGATTGCAGAGATTACTTTCTCGAAACTAGTAGGCGGGTTTCCTTTGAATATGCGCTTTTAGCTGGAATCAATGACTCGGCACACCATGCAGCAGAACTTGCTGAATTACTCCATGAATCGGGCAGTGGATATCACGTCAATTTGATACCCTTCAATCCAATAGAAGGCTCTGAGTATCAGCGTCCTTCCAAGCGTGCAGTGCTAGCGTTTGCTGGTGCATTGGAATCCTCTAAAATAACTGTTAGTGTACGTCAAACACGAGGACTGGATGCAAATGCAGCTTGTGGTCAGCTTCGGAACAAGTTCCAGAAAACACCTTTAGTCGCCGACCCTTTTGAAGTCAGAACGATTCCTAGAAGAACAGTTTCGTCTCTTTCTCCTTTTTCCTGTACGAACTCGCAAGGTTTCTTTGTCCTCACTCAAGGGTTAGGGATGCGGCGGAACAGTCCAGGATATTACAGTCCTCCGCGGCGAGGATACGGTGGCCGAGGAGGAGGCTCCAGTAGGAGGGGATACGGTGGAGGCAGGCGCAGGGATAACAACAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCCGAGGAGCTTCGTGTCCCTTTCGAGCGATTTGGGCCTGTTCGCGATGTTTACATTCCCAAGGATTATTACACGGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCGTATGATGCCTCGGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGAGAAATAACTGTTGTTGTGGCTGAAGAGACGAGAAAAAGACCCGAGGAGATGCGCCACAGGACTAGTAGATTCAGAGGACCAGGGGGCTATGGGGGGCAAAGGTCTTCCCGTTACGGGCGTTCCCGATCTCGCTCAAATACCAGATCGCGCTCACCACCTTATCACTCTGGTTCTAGAAGTCGATATCGCTCAAGGTCCTATTCTCCCGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCACGCAGAGCATCCTAGATCACCAAGAGGTCCTCCTGTGGAGCGAGATGGTGATCAAAAGCGTAGGTCCTATTCTCCTGCTTATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGCGTGGAAGATGAGGTTGCAGGTCGCTGGCAATGTGCTGCTGGGCTTCTGTATATCTGCAATTTATCACGACATTTTTAA 2100 0.4857 MLALLQHCTISMPLARALRPPPPTHVRPCFTAMVHAPVSPRANSDSQVLLGLSEKKLQQLAIDFGQESYRGKQLYHFIYQRKVKEIQDFSQLPLGFRKALEKAGWKVGRSPIFQTVTAADGTVKLLLKLEDNRLIETVGIPVMADDCVTRLTACVSSQVGCPLRCSFCATGKGGFSRNLKAHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLEAHHCLNKDVRIGQRMITISTVGVPNTIKKLASCKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMTDCRDYFLETSRRVSFEYALLAGINDSAHHAAELAELLHESGSGYHVNLIPFNPIEGSEYQRPSKRAVLAFAGALESSKITVSVRQTRGLDANAACGQLRNKFQKTPLVADPFEVRTIPRRTVSSLSPFSCTNSQGFFVLTQGLGMRRNSPGYYSPPRRGYGGRGGGSSRRGYGGGRRRDNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREITVVVAEETRKRPEEMRHRTSRFRGPGGYGGQRSSRYGRSRSRSNTRSRSPPYHSGSRSRYRSRSYSPAPRRQSDYSVSPRRHAEHPRSPRGPPVERDGDQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRVEDEVAGRWQCAAGLLYICNLSRHF 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01486 699 SFLD Radical SAM 44 391 IPR007197 GO:0003824|GO:0051536
Cca05g01486 699 Pfam Radical SAM superfamily 156 312 IPR007197 GO:0003824|GO:0051536
Cca05g01486 699 PANTHER 23S RRNA METHYLTRANSFERASE 37 396 IPR040072 -
Cca05g01486 699 SUPERFAMILY Radical SAM enzymes 123 347 - -
Cca05g01486 699 SUPERFAMILY RNA-binding domain, RBD 466 577 IPR035979 GO:0003676
Cca05g01486 699 MobiDBLite consensus disorder prediction 439 471 - -
Cca05g01486 699 SFLD adenosine C2 methyltransferase (RlmN-like) 44 391 IPR004383 GO:0006364|GO:0008173
Cca05g01486 699 Gene3D Aldolase class I 110 394 IPR013785 -
Cca05g01486 699 MobiDBLite consensus disorder prediction 650 665 - -
Cca05g01486 699 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 46 391 IPR027492 GO:0030488|GO:0070475
Cca05g01486 699 MobiDBLite consensus disorder prediction 616 644 - -
Cca05g01486 699 Gene3D - 462 589 IPR012677 -
Cca05g01486 699 MobiDBLite consensus disorder prediction 550 665 - -
Cca05g01486 699 ProSiteProfiles Radical SAM core domain profile. 147 377 IPR007197 GO:0003824|GO:0051536
Cca05g01486 699 CDD Radical_SAM 160 353 - -
Cca05g01486 699 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 37 396 - -
Cca05g01486 699 SMART rrm1_1 471 544 IPR000504 GO:0003723
Cca05g01486 699 Gene3D - 47 103 - -
Cca05g01486 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 470 548 IPR000504 GO:0003723
Cca05g01486 699 MobiDBLite consensus disorder prediction 575 614 - -
Cca05g01486 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 472 542 IPR000504 GO:0003723
Cca05g01486 699 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 45 389 IPR027492 GO:0030488|GO:0070475
Cca05g01486 699 SMART MiaB 151 360 IPR006638 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01486 Cca-Chr5 33796212 33805393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01486 452 532 Eukaryotic Initiation Factors Gene Family AT3G11400 39.506 8.67e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01486 K06941 - gmx:100801657 683.715