Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01482 ATGAACTCAGCATTATCCAACTTCATCTTCTACTTGGCTTCCGTCACTTGTTCTCCCAACGCAAACTCTCCATCCATAGAAGAGGTTAAAGAGACGGCACCGTTTTGGTCCTCAACTTTGCCATGCAAAACTCTCAGTTCCGTACACCAGCATCATCAGCAATGGCCCCCAAACCTACCAAAGCAGAGAAGAAGATTTTCACTAAAGGTGCTGAACATTCCTACGAAGATTCACAAGGGTATTATGGAAATCATTACCCCTGTTGAACTTATTAAGAAGGGAGACAAGGTTGGCTCTTCTGAAGCTGCCTTGCTTGCCAAGCTTGGCATTAGGCCCTTCTCATACGGGCTTGTGGTCCTATCCGTTTACGATAACGGTTCTGTATTTAGCCCTGAGGTTCTTGATCTTACTGAGGATGACCTCATTGAGAAATTTGCCGTTGGTGTCTCAATGGTTTCGTTGGCTATCTCATTCCCAACACTTGCAGCGGCACCACATATGTTTGTTAATGCCTACAAGAAGGTAAAGACATGGGATGTTTGA 543 0.4494 MNSALSNFIFYLASVTCSPNANSPSIEEVKETAPFWSSTLPCKTLSSVHQHHQQWPPNLPKQRRRFSLKVLNIPTKIHKGIMEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAVGVSMVSLAISFPTLAAAPHMFVNAYKKVKTWDV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01482 180 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 68 175 - -
Cca05g01482 180 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-LIKE 68 175 - -
Cca05g01482 180 Gene3D - 50 114 IPR043164 -
Cca05g01482 180 Pfam Insertion domain in 60S ribosomal protein L10P 67 110 IPR040637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01482 Cca-Chr5 33650582 33651979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01482 60 175 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 80.672 1.54e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01482 K02941 - ccaj:109791565 361.303