Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01476 ATGGGGTGCTGCTTCAGTGCCAGGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAACAAAGATGAGGATGGCTTGAGCGGCTTAAGCAGCAAGGTCTCCACTCCCTCTGTGCCTCTAACGCCGCGGACGGAGGGTGAGATCTTGAAGTTCTCAAACATGAAGAGCTTCACCTTCGGTGAGCTAAAAATTGCAACAAGGAACTTTCGTCCGGATAGTGTGGTGGGTGAAGGTGGATTTGGTTGTGTTTTTAAGGGGTGGATTGATGAGCAGTCCCTTGTACCAGTTAGACCAGGGACTGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAGGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAGACTGATTGGTTACTGCTTAGAGGATGATCAACGGCTTTTGGTGTATGAGTTTTTGACCAAGGGAAGTTTAGATAATCATTTATTTAGGAGAGCTCCTTACTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCTAATATCTTGCTTGACTCAAATTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCTGCAGGTGATAAGAGTCATGTCTCTACAAGGGTAATGGGAACATATGGCTATGCTGCTCCTGAATATATGGCCACAGGCCACTTGACCAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATCATGTCTGGCAAACGTGCACTTGACAACAACAGGCCAAGTGGGGAGCACAACTTGATTGAATGGGCCAAACCTTACATCAGCAGCAAACGCAGGATCTTCCAAGTCATGGATGCTCGCATTGAAGGCCAATACACATTGCGCCAAGCTATGAAAGTAGCCAACCTTGCCATTCAATGCCTCTCTGTGGAGCCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAGCATTGGAAGGACTTCAGGATTCTGATGACAAAGCTGGAGGGGTGGAAAGCTCTCGAGATCAAACTGTCAAAAGGAATGGCCATAGCTCTAGCAGCAATGGCCCTAGACAACAACATAGAGGTAAACAACATGAAACAAGATTTCACAAGTGA 1215 0.456 MGCCFSARIKAESPPRNGLSSKDGNKDEDGLSGLSSKVSTPSVPLTPRTEGEILKFSNMKSFTFGELKIATRNFRPDSVVGEGGFGCVFKGWIDEQSLVPVRPGTGMVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVRLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRAPYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSGEHNLIEWAKPYISSKRRIFQVMDARIEGQYTLRQAMKVANLAIQCLSVEPRFRPKMDEVVRALEGLQDSDDKAGGVESSRDQTVKRNGHSSSSNGPRQQHRGKQHETRFHK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01476 404 SUPERFAMILY Protein kinase-like (PK-like) 49 356 IPR011009 -
Cca05g01476 404 MobiDBLite consensus disorder prediction 32 46 - -
Cca05g01476 404 PANTHER KINASE 1B 24 400 - -
Cca05g01476 404 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01476 404 CDD STKc_IRAK 80 359 - -
Cca05g01476 404 Gene3D Phosphorylase Kinase; domain 1 50 159 - -
Cca05g01476 404 PANTHER OS01G0588500 PROTEIN-RELATED 24 400 - -
Cca05g01476 404 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Cca05g01476 404 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Cca05g01476 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cca05g01476 404 MobiDBLite consensus disorder prediction 357 377 - -
Cca05g01476 404 Gene3D Transferase(Phosphotransferase) domain 1 160 382 - -
Cca05g01476 404 MobiDBLite consensus disorder prediction 357 404 - -
Cca05g01476 404 MobiDBLite consensus disorder prediction 10 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01476 Cca-Chr5 33563518 33567715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01476 60 356 Glycoside Hydrolase AT3G07070 52.508 1.20e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca05g01476 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01476 - - gmx:100775335 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01476 05 33563518 33567715 Cca05g01476 05 33563518 33567715 ECH
Cca01g00413 01 4927668 4932215 Cca05g01476 05 33563518 33567715 PCT