Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01472 ATGAGGAAACCTTGTTGTGACAAAGAAAGCATCAATAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGACTACATCCGAGTTCATGGTGAAGGATGTTGGCGTTCCATCCCTAAAGCTGCTGGCCTTCATCGTTGTGGCAAAAGCTGTAGACTGAGATGGTTAAACTACTTAAGACCAGACATCAAACGTGGAATTTTTGCCGAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAACAGGTGGTCACTGATTGCTGGAAGGTTGCCTGGAAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGCAGAAAACTCATAAAAATGGGAATTGATCCAAATAACCACAAGCCACACCAAAGCTTTTCTCATCCTCATGCTTCTGTTGAAGTTGCATCAACATCCGAGTCCATGAGCAAAGACCAAAAAGTCCCTTTCTTAAAAAAATCCAGTGGTGATGCGGCCACGGATAGGATTTCATTCACAAAGAGCCTTGAAGAAGAAACAGCAATTATTTCATCACCCCCTTTGAATCTTGACCTAACAATTGCTTTACCTTCGCCTATGATTGGTGCTGCGGAAGACAAGCCAATGCAAAATTCCGAATCCGCCAAGTCTTGGGACATAAATATAGATCTCAACTGTTAA 675 0.4311 MRKPCCDKESINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSHPHASVEVASTSESMSKDQKVPFLKKSSGDAATDRISFTKSLEEETAIISSPPLNLDLTIALPSPMIGAAEDKPMQNSESAKSWDINIDLNC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01472 224 PANTHER MYB TRANSCRIPTION FACTOR 2 211 - -
Cca05g01472 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Cca05g01472 224 CDD SANT 71 111 IPR001005 -
Cca05g01472 224 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 211 - -
Cca05g01472 224 Gene3D - 68 141 - -
Cca05g01472 224 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca05g01472 224 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Cca05g01472 224 SMART sant 12 62 IPR001005 -
Cca05g01472 224 SMART sant 65 113 IPR001005 -
Cca05g01472 224 CDD SANT 15 60 IPR001005 -
Cca05g01472 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Cca05g01472 224 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca05g01472 224 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca05g01472 224 Gene3D - 13 65 - -
Cca05g01472 224 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01472 Cca-Chr5 33494348 33496958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01472 2 195 MYB Transcription Factor Family AT4G38620 56.585 7.26e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g01472 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01472 K09422 - gmx:100793444 360.147