Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01468 ATGGCCACCAAAGCCGAAGGCATCCAAGAAGAAGAATTCTCACGTATGGAAGATGGTGTTTCCTCTAGCCCTTCCAGATGTGACACATTACATAACTGTTGTTCAAACAACGTTGTAACCCTAGTACAGAAGGTGATCGCAGAATTGATTGGCACATATTTTGTGGTATTTGCGGGTTGTGGGTCTGTGGCAGTGAATAAGATCTATGGTTCTGTGACATTTCCTGGAATTTGTGTCACATGGGGGCTCATCGTAATGGTCATGATTTACTCAGTTAATCATATCTCTGGAGCTCACTTCAATCCTGCAGTCACCATCACTTTGGCCATCTTTCGCAGGTTTTCATATAAAGAGGTGCCACTGTACGTTATTGCTCAGTTGCTAGGGTCGATACTTGCTAGTGGCACATTAGCCCTAATGTTGGATGTAACGCCTAAAGATTACTTTGGAACAGTACCAGTTGGATCCATTGCACAGTCTTTAGTTGCTGAAATCATCATAACCTTTCTCTTGATGTTTGTTGTATCTGCTGTTGCTACAGATCACAGAGCGGTGAATGAATTTGCTGGAGTTGCAGTTGGCATGACAATAATGTTGAATGTCTTCATTGCCGGACCTGTATCAGGAGCTTCCATGAACCCTGCAAGAAGTATTGGACCTGCGCTTATAAAGCATGTTTACAAAGGGTTATGGATATACGTAATTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCCTATAACCTTCTTAGATCCACAGAAATGCCATCTTCAGAATAA 783 0.4266 MATKAEGIQEEEFSRMEDGVSSSPSRCDTLHNCCSNNVVTLVQKVIAELIGTYFVVFAGCGSVAVNKIYGSVTFPGICVTWGLIVMVMIYSVNHISGAHFNPAVTITLAIFRRFSYKEVPLYVIAQLLGSILASGTLALMLDVTPKDYFGTVPVGSIAQSLVAEIIITFLLMFVVSAVATDHRAVNEFAGVAVGMTIMLNVFIAGPVSGASMNPARSIGPALIKHVYKGLWIYVIGPIIGAIAGALAYNLLRSTEMPSSE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01468 260 CDD MIP 43 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 Pfam Major intrinsic protein 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 PANTHER AQUAPORIN NIP2-1 10 257 IPR034294 -
Cca05g01468 260 SUPERFAMILY Aquaporin-like 39 257 IPR023271 -
Cca05g01468 260 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 TIGRFAM MIP: MIP family channel proteins 47 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca05g01468 260 MobiDBLite consensus disorder prediction 1 23 - -
Cca05g01468 260 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Cca05g01468 260 Gene3D Glycerol uptake facilitator protein. 3 259 IPR023271 -
Cca05g01468 260 PANTHER AQUAPORIN NIP4-1-RELATED 10 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01468 Cca-Chr5 33462084 33464505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01468 1 260 Major Intrinsic Protein MIP AT5G37810 62.069 7.19e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01468 K09874 - gmx:100803763 409.453