Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01467 ATGGAGGAGGCGGTGGCCGTACGGCGAGCCTTGGAGCTGCTCAACCAGAACGACCCCGTTTTGAGGGTGGAAGCCGCCAGGGACATACGCCGCCTCACCAAGACCTCCCACCGCTGCCGCCGCCACCTCCGACATGCCGTGCCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCGCTTCTCGCTCTGCTTAACCTCGCCGTCAAAGACGAAAAGAACAAAATTAACATTGTGGAAGCCGGTGCATTGGAGCCGATAGTTAGTTTCCTCACATCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCATTGCTCACTCTATCAGCCTCTCCAACCAACAAACCAATCATCAGTGATTGTGGCACCATTCCTCTTCTTGTGAATATTCTCAGAGATGGAACCCCACAAGCTAAAGCCGATGCTGTAATGGCTCTGTCCAATTTGTCAACACACCCTGATAACCTCAGCATCATCCTTAAAACAAATGCAATGCCATGTATAGTCGACCTTCTCAAAACTTGTAGAAAGTCCTCAAAAATAGCTGTAAAATGTTCTGCTTTGATAGAATCCTTGGTGGGGTATGAGGAGGGAAGAATTGCCTTAACATGTGAAGACGGTGGGGTTCTTGCAGTTGTGGAGGTTCTTGAAAATGGTTCCCCCCAAAGTAGGGAACATGCTGTTGGAGCCCTTCTTATAATGTGCCAGAGTGATAGATGTAAATATAGGGAACCAATTCTCAGAGAAGGTGTTATTCCTGGACTTCTAGAGCTTACAGTTCAAGGGACCGCTAAGTCTCAGCCAAAGGCACGTACCCTTTTGCAGTTACTAAGAGAGTCTCCATATTCAAGACCTGAAGTTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCTCAGATTGATGGTGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAACAAAGGGCTCTTGTATGTACCCCTAGTGATATCCCTATTACAAATTGTGCTTCTCAAGTTTCTTCTAAATAA 1086 0.4724 MEEAVAVRRALELLNQNDPVLRVEAARDIRRLTKTSHRCRRHLRHAVPPLVSMLRVDSPEFHEPALLALLNLAVKDEKNKINIVEAGALEPIVSFLTSQNPNLQEYATASLLTLSASPTNKPIISDCGTIPLLVNILRDGTPQAKADAVMALSNLSTHPDNLSIILKTNAMPCIVDLLKTCRKSSKIAVKCSALIESLVGYEEGRIALTCEDGGVLAVVEVLENGSPQSREHAVGALLIMCQSDRCKYREPILREGVIPGLLELTVQGTAKSQPKARTLLQLLRESPYSRPEVEPDTLENIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDIPITNCASQVSSK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01467 361 Pfam Armadillo/beta-catenin-like repeat 38 73 IPR000225 GO:0005515
Cca05g01467 361 Gene3D - 2 200 IPR011989 -
Cca05g01467 361 SMART arm_5 158 200 IPR000225 GO:0005515
Cca05g01467 361 SMART arm_5 35 74 IPR000225 GO:0005515
Cca05g01467 361 SMART arm_5 76 116 IPR000225 GO:0005515
Cca05g01467 361 SMART arm_5 201 242 IPR000225 GO:0005515
Cca05g01467 361 SMART arm_5 117 157 IPR000225 GO:0005515
Cca05g01467 361 Gene3D - 201 302 IPR011989 -
Cca05g01467 361 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 344 - -
Cca05g01467 361 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 45 87 IPR000225 GO:0005515
Cca05g01467 361 Pfam Armadillo-like 89 163 IPR006911 -
Cca05g01467 361 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 128 170 IPR000225 GO:0005515
Cca05g01467 361 PANTHER U BOX DOMAIN-CONTAINING 3 344 - -
Cca05g01467 361 SUPERFAMILY ARM repeat 9 293 IPR016024 -
Cca05g01467 361 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 87 124 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01467 Cca-Chr5 33456038 33460287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01467 50 284 U-box Gene Family AT2G23140 35.319 2.52e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01467 - - ccaj:109805282 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00421 01 5034431 5038422 Cca05g01467 05 33456038 33460287 PCT