Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01466 ATGGCACTCTCCTTGACATCTCATGGGGTCAATGAGTACCAAAAGCCTGTGATTGAAGAGGAAGATGGTTCACTGAACACTAATGGGCTCAGCAATGATTCAGCTTCAGCCTTAACCCGTTCTCCTCCTCTATGTGGCAATGACAATGGTCATGTTCATAAGGGCACACATTACCAGCTTGAAGAGGCAGAATCTCTGATTAATTTCAAAGCCAATGAGCACAGCAACCTAATGCAAGGTAGTGATCAATCTTTTCTTGGCTTTCAGCAGAGTTGGCTTTTCTCCAAAGAGAGTAGTTTGCATGAAGATTATAGCCAATGGAACCATGTTAGTCCTAAAAGCACCACAGACACGCGCCTAGTGCAAAATTTGAGTTGCTTTGAAACTGCCACTGGCTATAGCTCCATATTCAATGGTGCAAATGAGAAGCAACGTGGTGGAAGTTCATCATCTGGGTGGCTATACTCTGAACCAAATGTCCCTAGTGATGGCCTGCATGAGTCAGCAGCACAAGAATTGGTCTTAAAAAAACGCTCTTCTATGggagagaacatgcaagcttccaatgccaagaagCCATGCACAACTGCAAATAAAGCAGCAAAACCAAAGTCAAACCCTTCCAAGGATCCTCAAAGCGTTGCTGCCAAGAATAGAAGAGAGAAAATCAGTGAGCGGCTTAAGATACTTCAAGAACTTGTACCCAACGGTTCCAAGGTTGATTTGGTCACCATGTTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCCCCTGACATTTCTCAAGTGAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 885 0.4192 MALSLTSHGVNEYQKPVIEEEDGSLNTNGLSNDSASALTRSPPLCGNDNGHVHKGTHYQLEEAESLINFKANEHSNLMQGSDQSFLGFQQSWLFSKESSLHEDYSQWNHVSPKSTTDTRLVQNLSCFETATGYSSIFNGANEKQRGGSSSSGWLYSEPNVPSDGLHESAAQELVLKKRSSMGENMQASNAKKPCTTANKAAKPKSNPSKDPQSVAAKNRREKISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01466 294 MobiDBLite consensus disorder prediction 13 32 - -
Cca05g01466 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Cca05g01466 294 MobiDBLite consensus disorder prediction 137 164 - -
Cca05g01466 294 Gene3D - 202 264 IPR036638 GO:0046983
Cca05g01466 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 292 - -
Cca05g01466 294 CDD bHLH_AtIND_like 208 270 - -
Cca05g01466 294 MobiDBLite consensus disorder prediction 180 219 - -
Cca05g01466 294 MobiDBLite consensus disorder prediction 137 157 - -
Cca05g01466 294 MobiDBLite consensus disorder prediction 181 213 - -
Cca05g01466 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 266 IPR036638 GO:0046983
Cca05g01466 294 Pfam Helix-loop-helix DNA-binding domain 217 257 IPR011598 GO:0046983
Cca05g01466 294 SMART finulus 213 262 IPR011598 GO:0046983
Cca05g01466 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01466 Cca-Chr5 33440074 33442124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01466 73 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 49.787 2.22e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g01466 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01466 - - gmx:106795957 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00422 01 5071968 5073618 Cca05g01466 05 33440074 33442124 PCT