Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01457 ATGAAGAGGGAAAGGGTGGAAGACGCGAGAGGGGAATGCTCTAGTAGTGCGAAGGGAAAGAAGATGTGCGAGGAAGAAGAACGCGAGGACAAGTTGCTGGCGGGTGTAGGGTACAAAGTGTGTTCCTCAGACATGGCTGACGTGGCACAGAAGCTCGAGCAATTGGAGATGGTGATGGACGAAGACGGAATTCCCCATCTCCCCACCGACACCGTGCACTACGACCCAACCGATCTCTACGGTTGGGTCCAGAACATTCTCACCGAAATCAACAACAACAACGATAACGCACTCAACCACACCACCGTCAACGCTCTCCTTCCCTCGCCGTTTATCGCCGATTCCGAGAACGACCTCAGAGCGATTCCGTTACCCTACGTCCAAGCCTATCCGCAACCGGAAAATCAAATTCAAAACCAAAATCACTACAAGCGTTTCAAGAGTTCCTCCTCGTCTTCTCCGCTGTCGCCGGCGGTTTCCTCGATTTCATCGGAAAACGCGCTTCCGGTGGTTCTCGTGGAGGAAGCAGGCGTGCACCTCGTCCACGCGCTCATGGCGTGCGCGGAGGCCGTTCAGCTTGGAAACGCGAGCCTCGCCGGGGCTCTCGTGAAGCACGCGGGAACCCTCGCGGCGTCGCAAGGCGGTTCCATGGGGAAAGTCGCGTCGTTCTTCGCTCAAGCACTCGCTCGAAGAATCTACGGTTTCTACCCGCACGAAACCCTAGACTCTACCTACTCCGACACACTTCACATGCATTTCTATGAGTCAAGTCCGTACCTGAAGTTCGCGCACTTCACCGCGAACCACGCCATCCTCGAAGCCTTCGCCGCCGCGGAAACGATTCACGTGATCGATTTCGGCCTGAAGCAGGGGCTGCAGTGGCCGGCGCTGATGCAAGCGCTGGCAGTCCGTCCTGGAGGTCCGCCGGCGTTCCGCCTCACCGGAATCGGTCCGCCGCGACTCGACGACACGGACTCCGACGCGCTGAGTCAGGTCGGTTTGAAGCTCGCGGAACTCGCGCGAACGATTAAGGTTCGATTCGAGTTCCGCGGATTGGTGTGTAACAGCTTGACGGATCTGGATCCGTCCGTGCTAGAAATCCGTCCCGGAGAATCCGTCGCTGTGAACGCCGTCTTCGAGCTTCACCGGTTGCTAGCGCGACCTGGAGCGATAGAAAGCGTGTTAGCGACAATTAAGATGATGAAACCGGAGATAATTACCGTGGTGGAGCAAGAAGCGAACCACAACGAACCGGTGTTTCTGGACCGGTTCACGGAGGCGTTGTACTACTACTCGAGTTTGTTCGACTCGCTGGAGGGATCGGCGGCGGCGCCGAGCGAGGAGGCGTTGGTGATGTCGGAGATGTACCTCGGGAGACAGATATGCAATGTGGTGGCGTGCGAGGGGGAGGAGCGCGTGGAGAGGCACGAGACGCTGGGGCAGTGGAGAGGGAGGCTCGGTTCGGCGGGGCTGGAACCGGTTCGGTTGGGTTCGAACGCTTTCAGACAAGCGAAGATGTTGCTGGGACTGTTTCGCGAGGGGGAAGGGTATAGGGTGGAAGAGAACAATGGGTGCCTCATGCTTGGCTGGCACACGAGGCCACTCGTCGCTACCTCCGCGTGGAGACTCGCACCCGCTGAGTTCACTCGCTGGGTCCGTGTTGGGAAAATGACCTGA 1677 0.5826 MKRERVEDARGECSSSAKGKKMCEEEEREDKLLAGVGYKVCSSDMADVAQKLEQLEMVMDEDGIPHLPTDTVHYDPTDLYGWVQNILTEINNNNDNALNHTTVNALLPSPFIADSENDLRAIPLPYVQAYPQPENQIQNQNHYKRFKSSSSSSPLSPAVSSISSENALPVVLVEEAGVHLVHALMACAEAVQLGNASLAGALVKHAGTLAASQGGSMGKVASFFAQALARRIYGFYPHETLDSTYSDTLHMHFYESSPYLKFAHFTANHAILEAFAAAETIHVIDFGLKQGLQWPALMQALAVRPGGPPAFRLTGIGPPRLDDTDSDALSQVGLKLAELARTIKVRFEFRGLVCNSLTDLDPSVLEIRPGESVAVNAVFELHRLLARPGAIESVLATIKMMKPEIITVVEQEANHNEPVFLDRFTEALYYYSSLFDSLEGSAAAPSEEALVMSEMYLGRQICNVVACEGEERVERHETLGQWRGRLGSAGLEPVRLGSNAFRQAKMLLGLFREGEGYRVEENNGCLMLGWHTRPLVATSAWRLAPAEFTRWVRVGKMT 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01457 558 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 542 IPR005202 -
Cca05g01457 558 SMART DELLA_2 30 100 - -
Cca05g01457 558 Pfam GRAS domain family 180 542 IPR005202 -
Cca05g01457 558 Pfam Transcriptional regulator DELLA protein N terminal 30 94 IPR021914 -
Cca05g01457 558 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g01457 558 Gene3D - 28 90 IPR038088 -
Cca05g01457 558 PANTHER DELLA PROTEIN RGL1 25 542 IPR030006 GO:0003712|GO:0005634
Cca05g01457 558 ProSiteProfiles GRAS family profile. 171 542 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01457 Cca-Chr5 33324141 33327590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01457 29 548 GRAS Transcription Factor Family AT2G01570 57.532 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca05g01457 GRAS 5e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01457 K14494 - gmx:547719 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00432 01 5261615 5264130 Cca05g01457 05 33324141 33327590 PCT