Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01446 ATGAAAGCCTCGGGATTTGGATTAGCAAAAGACTCAAATATAACATGCAAGTTGGATCTAGCAGAAATTGGCACCATTGGAAGAATTTACCATGTCAATCTAGTCTGGCTTTATGTTTTTTGCTTCCACCGGGACAAGCGAGCTCTTGTTTATGAGTTTGTGGAAAATGGTTCTCTCAGCAAGTACTTGTTTGGAAGCCAAAACCAAGACATCGAGTTGGGGAAGCTTCATAAGATTGCAATTGGAACAACAAAAGGAATTGCTTATTTACATGAGGAATGTCAACAAAGGATAATTCATTATGATATTAAATCTGAGAATGTTCTTCTTGATTTGAACTTGGGACTGAAGGTAACAGATTTTGGCCTGGCAAAGCTTTGTAGCAGAAGAAGTAATGTTTCGTCAATACACAGAGAAACAGTGGGATACGGTGCTCCTAAAATGTGGAAGCCTTATCCGGTGACTCACAAGTGTGATGTTTATAGTTTTGGTATTCTTCTCTTTGAAATTGTAGGGAGGAGAAGGCATTGTGATGACAACTGCAATGAATCGCAACAATGGTTTCCAAAATGGACTTGGGATATGTTTGAGAATAATGAATTGTCTGTAATGCTTTCACTTTGTGGAATTGAAGAGAAAGACAAGGAGAAAGCCGAAAGAATGTCAAAGGTGGCTCTATGTTGTGTTCAGTATTCACCAAATGATAGACCTCTTATGAGTATTGTGGTGAAGATGTTAGAGGGTGAAATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGAGTCTAGGAAGCCAAACTTTCCAGATTCAGATACTACATCATTGCAGACAAAATCTTCTGGAGAATACAAGCAAAATACATTTCAGATTGAAAAATCTACTTAA 891 0.3805 MKASGFGLAKDSNITCKLDLAEIGTIGRIYHVNLVWLYVFCFHRDKRALVYEFVENGSLSKYLFGSQNQDIELGKLHKIAIGTTKGIAYLHEECQQRIIHYDIKSENVLLDLNLGLKVTDFGLAKLCSRRSNVSSIHRETVGYGAPKMWKPYPVTHKCDVYSFGILLFEIVGRRRHCDDNCNESQQWFPKWTWDMFENNELSVMLSLCGIEEKDKEKAERMSKVALCCVQYSPNDRPLMSIVVKMLEGEIEISPPPFPFQNLESRKPNFPDSDTTSLQTKSSGEYKQNTFQIEKST 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01446 296 MobiDBLite consensus disorder prediction 260 296 - -
Cca05g01446 296 Gene3D Phosphorylase Kinase; domain 1 8 54 - -
Cca05g01446 296 PANTHER PUTATIVE-RELATED 17 264 - -
Cca05g01446 296 SUPERFAMILY Protein kinase-like (PK-like) 20 247 IPR011009 -
Cca05g01446 296 Pfam Protein tyrosine and serine/threonine kinase 20 246 IPR001245 GO:0004672|GO:0006468
Cca05g01446 296 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01446 296 MobiDBLite consensus disorder prediction 265 296 - -
Cca05g01446 296 SMART serkin_6 8 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01446 296 Gene3D Transferase(Phosphotransferase) domain 1 55 253 - -
Cca05g01446 296 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 264 IPR045874 GO:0004672
Cca05g01446 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01446 Cca-Chr5 33163299 33164189 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01446 20 276 Receptor kinase-like Gene Family AT5G38280 38.951 2.12e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca05g01446 PK_Tyr_Ser-Thr 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01446 - - ccaj:109799501 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01446 05 33163299 33164189 Cca05g01446 05 33163299 33164189 ECH