Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01436 ATGAAGTCCGCGCGGGTCAGACAAGCGATCCTCCTCACGGTTCTGGCGTGGGCGTTCGCCATTGCAGGTTCGGATCTAGCTTCGGACAGAGCAGGGTTGTTGGCTCTGAGAAGCGCGGTGAGGGGACGCACGCTCTTATGGAACGCCAGCCAAACGAGTCCTTGTTCCTGGACAGGCGTGGTTTGCACCGGTGGGAGAGTAACCCTGGTGCGCCTCCCCGCTATGGGCCTCACCGGTTCGCTCCCCTCCGGTTTGGGAAACCTCACCCAACTGCAGACACTCTCTCTCCGGTTCAACGCGCTAACCGGACCAATCCCCGCGGATTTCGCCGGTTTGAAAGCGCTTCGCAACCTCTACTTGCAGGGGAACTTCTTCTCCGGCCAAGTTCCCGATTCCGTCTTCGCCTTGCAGAACCTCGTCAGGCTGAATTTGGGTCACAACAATTTCAGCGGCGAGATTTCGCCCAAATTCAACTCGCTCACTCGCTTGGCCACTCTTTATCTAGAGCGCAACAATTTCACTGGCTCCATCCCTGACCTAAGCGTTCCACCGTTGTATCAGTTCAACGTGTCTTTCAATTCCTTATCCGGTCCCATTCCCGAGCGTTTTTCGCGTTTGGACCAAACCGCGTTTCTCGGAAACTCACTCTGCGGGGAGCCTCTGCAGCTCTGCCCCGGAACCGGAGAGAAAAGCAACAAGCTCTCCGGCGGTGCCATTGCGGGGATTGTAATCGGTTCTGTCTTCGGTGTGCTTTTGATTCTGCTCCTTTTCTTTTTCTTGTGTAGAAAAAGGAGCCAGAAGAGTTACAATGAAACCGCTCCACCTGGGAAGCGTGTTGTAGAAGGTGAAAAGAGTGAGGTTCGGAGTGGTGGTGAGGCTGGGAATTCAGGTTCGGCCGTGGCGGGTTCGGTGGAGAAGAGTGAGGTTCGGAGTGGAGACAAGAGTTTGGTGTTTTTTGGGAATGTGAATAGGGTGTTCAGTTTGGATGAGTTGTTGAGGGCTTCTGCGGAAGTTTTGGGGAAGGGGACTTTTGGAACGACTTACAAGGCGACATTGGAGATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTTACTGCAACGGAGAGGGAATTCAGGGAGAGGATTGAGCAAGTGGGGAAGATGGTTCATCAAAACTTGGTCCCACTTAGGGGTTATTACTTTAGCAGGGATGAGAAGCTTGTTGTGTATGATTACATGCCCATGGGAAGCTTATCTGCTCTCTTACATGCAAATGGTGGGGTGGGGAGGACTCCGCTAAATTGGGAAACAAGGTCTGCCATTGCTCTTGGCGCTGCTCGTGGGATTGCATACCTTCATTCACATGGCCCAACATCCTCACATGGAAACATCAAGTCATCGAATATCCTTCTCACCAAATCCTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCCTACCTTGCTCTCCCAACCTCTACACCTAACCGTGTTTTTGGTTACCGGGCGCCAGAGGTCACTGATGCGCGCAAAGTATCTCAAAAAGCTGATGTCTATAGCTTTGGTATCATGCTTTTGGAGCTTCTTACTGGGAAGGCTCCCACTCATTCTTCATTGAATGAAGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTCAAGATGAGTGGAACACTGAAGTATTTGACATGGAGCTCCTGAGGTACCAGAGTGTTGAGGAGGAAATGGTCAAGCTCTTGCAGCTTGCCCTTGAATGTTGTGCTCAATATCCTGACAAGAGACCTTCAATGGAGGAGGTGGCAAGCAAGATTGGGGAAATTTGTCTTCCTAGTTTAGAGAAAGAGGAAGGGAAGAATCAAGGTTTTAAAGATGCAGATAACGGATTTTCCCAACAGTACTACTCTGTTGACTCGGGTGTGTCACATGCTTGA 1917 0.5143 MKSARVRQAILLTVLAWAFAIAGSDLASDRAGLLALRSAVRGRTLLWNASQTSPCSWTGVVCTGGRVTLVRLPAMGLTGSLPSGLGNLTQLQTLSLRFNALTGPIPADFAGLKALRNLYLQGNFFSGQVPDSVFALQNLVRLNLGHNNFSGEISPKFNSLTRLATLYLERNNFTGSIPDLSVPPLYQFNVSFNSLSGPIPERFSRLDQTAFLGNSLCGEPLQLCPGTGEKSNKLSGGAIAGIVIGSVFGVLLILLLFFFLCRKRSQKSYNETAPPGKRVVEGEKSEVRSGGEAGNSGSAVAGSVEKSEVRSGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTATEREFRERIEQVGKMVHQNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYLHSHGPTSSHGNIKSSNILLTKSFEARVSDFGLAYLALPTSTPNRVFGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSVVQDEWNTEVFDMELLRYQSVEEEMVKLLQLALECCAQYPDKRPSMEEVASKIGEICLPSLEKEEGKNQGFKDADNGFSQQYYSVDSGVSHA 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01436 638 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Cca05g01436 638 Gene3D Ribonuclease Inhibitor 30 133 IPR032675 -
Cca05g01436 638 ProSiteProfiles Protein kinase domain profile. 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01436 638 PANTHER OS05G0588300 PROTEIN 10 609 - -
Cca05g01436 638 Gene3D Ribonuclease Inhibitor 134 234 IPR032675 -
Cca05g01436 638 PANTHER INACTIVE RECEPTOR KINASE-RELATED 10 609 - -
Cca05g01436 638 Gene3D Phosphorylase Kinase; domain 1 299 407 - -
Cca05g01436 638 Pfam Protein kinase domain 336 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01436 638 MobiDBLite consensus disorder prediction 268 305 - -
Cca05g01436 638 CDD STKc_IRAK 339 602 - -
Cca05g01436 638 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Cca05g01436 638 Gene3D Transferase(Phosphotransferase) domain 1 408 622 - -
Cca05g01436 638 SUPERFAMILY L domain-like 47 212 - -
Cca05g01436 638 SUPERFAMILY Protein kinase-like (PK-like) 337 597 IPR011009 -
Cca05g01436 638 Pfam Leucine rich repeat 85 123 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01436 Cca-Chr5 33034476 33037615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01436 25 599 Receptor kinase-like Gene Family AT1G48480 57.026 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g01436 Pkinase 2.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01436 - - gmx:100801103 1051.58