Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01425 ATGACGGCGGGGAAGCAAACCAcgtcgtcttcggtatctctttcatctgcgtcgtcgtcgtcgtcgtcttcgGATGAGAGAGAGTACGAGGTGCAGGACCTTAGGGACCGCTTGAAGTCTTCGCGAGGGAGCAGGTTCAATCTGATTGAGACGGAGTTGGCGCTGAACTCGCGTTGGAGCAAGTTCAGTCGCCAAGCTCTTCTCCATGGAATCCGAGGCTTCTCCATCGACTTCTTTAAAAACTTCATCATTCATCCTGATAACAGGTGGTATCGGGCATGGACAAAGTTCATATTGTTATGGGCAGTATATTCATCCTTTTTCACTCCAATGGAGTTTGGATTTTTCCGTGGCCTACCTGAAAATCTCTTTATACTGGACATCATTGGACAAGTAGCTTTTCTCGTGGATATTGTCTTGCAATTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGTATGGTCTACAAGAGAACTCCTATTGCTCTAAGGTATCTAAAATCTAGCTTTATATTTGATCTTCTTGGATGTATGCCCTGGGACATCATCTTCAAGGCTTGTGGACGAAAAGAGGAAGTGAGGTACCTTTTGTGGATCAGATTATACCGGGTGCGGAAAGTGACAGATTTTTTCCACAAGTTGGAGAAGGACATACGTGTCAATTACATTATTACCCGGATTGTGAAACTTATAGTAGTTGAACTCTACTGCACCCATACAGCAGCTTGCATTTTCTACTATTTGGCTACAACACTACCTGAATCCCAAGAAGGGTACACATGGATAGGAAGTTTAAAAATGGGTGACTACAGTTATTCACATTTCAGAGAAATTGATATTTGGAAGCGCTACACAACATCTCTGTATTTCGCTATTGTTACAATGGCTACAGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATATATGTTTCATTTGATATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTCAGGGACAAGATGACTGACCTTATGAAATATATGAACAGAAATAGGCTTGGAAGGGATATCCGTGAACAAATAAAGGGTCATCTGCGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATTCAGGACATCCCTATTTCTATTCGAGCTAAGATATCCCAAACATTATATTTGCCATACATTGAAAAGGTTTCTCTTTTTAAAGGTTGCTCTTCAGAATTCATCAATCAGATTGTTATCAGGCTCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATACTGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAATGTTGGAGGAAGTAGGCACAGCTGAAGACGGGACTGAAGAAACTGTTTCACTTCTGCAGCCTAACAGTTCATTTGGAGAGATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGCGTGTGTGAACTGAGTAGACTCCTGCGACTTGATAAACAATCATTTACAAATATCCTAGACATATACTTCTATGATGGAAGGAAAGTATTAAATAACCTTCTAGAGGCAAAAGAGTCTTTTCGAGGTAAACAGTTGGAGTCAGACATCACATTTCATATCGGAAAGCAAGAAGCTGAGCTTGCTTTGAAGGTTAATAGTGCAGCTTTTAATGGGGATCTGTGTCAGCTAAAAGGTTTGATTCGAGCTGGAGCTGATCCCAACAAGATGGATTATGATGGAAGATCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATAACACTTTTCCTTATTAAAGAAGGTGTAGATGTCAATATTAAAGATAACTTCGGGAACACACCCTTACTTGAAGCAGTTAAGAATGGACATGATCGAATTGCTTCTTTACTTGTTGGAGAAGGGGCCTCTATGAAGATAGAAAACGCTGGTTGTTTTTTGTGTACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAAGATTATGATTACCGAAGCCCTCTTCACATTGCTGCAGCTGAAGGTTTATACCTAATGGCAAAGTTTCTACTAGAAGCCGGAGCTAGTGTTTTTTCCAAAGACAGACGGGGAAATACACCGCTTGATGAAGCCCGGATGTGTGGAAACCAGAATCTGATCAAGCTACTAGAAAATGCAAAATCTGCTCAACTGTCAGAATTCCCATATCCCTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAGTAGAAGACATGGAATTGTATTATGGGTTCCACAATCAATCGAAGAGCTAATCAAAACAGCAGCAGAACAAATAGAATTTTCTGGCGATTCTTGTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTAGATATGATTAAGGACGGTCAGAAACTGTATTTAGTCCATGAAACACATTAG 2514 0.3938 MTAGKQTTSSSVSLSSASSSSSSSDEREYEVQDLRDRLKSSRGSRFNLIETELALNSRWSKFSRQALLHGIRGFSIDFFKNFIIHPDNRWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQVAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSSFIFDLLGCMPWDIIFKACGRKEEVRYLLWIRLYRVRKVTDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKMGDYSYSHFREIDIWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHLRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVILEQGNVVDQLYFVCHGMLEEVGTAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELSRLLRLDKQSFTNILDIYFYDGRKVLNNLLEAKESFRGKQLESDITFHIGKQEAELALKVNSAAFNGDLCQLKGLIRAGADPNKMDYDGRSPLHLAASRGYEDITLFLIKEGVDVNIKDNFGNTPLLEAVKNGHDRIASLLVGEGASMKIENAGCFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHIAAAEGLYLMAKFLLEAGASVFSKDRRGNTPLDEARMCGNQNLIKLLENAKSAQLSEFPYPSQEFTDKMHPKKCTVFPFHPWDPKDSRRHGIVLWVPQSIEELIKTAAEQIEFSGDSCILSEDAGKITDVDMIKDGQKLYLVHETH 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01425 837 ProSiteProfiles KHA domain profile. 764 837 IPR021789 -
Cca05g01425 837 SUPERFAMILY Ankyrin repeat 561 740 IPR036770 -
Cca05g01425 837 CDD CAP_ED 412 526 IPR000595 -
Cca05g01425 837 Pfam Ankyrin repeats (3 copies) 658 739 IPR002110 GO:0005515
Cca05g01425 837 Pfam Ankyrin repeats (3 copies) 563 650 IPR002110 GO:0005515
Cca05g01425 837 SUPERFAMILY cAMP-binding domain-like 340 530 IPR018490 -
Cca05g01425 837 SMART ANK_2a 621 650 IPR002110 GO:0005515
Cca05g01425 837 SMART ANK_2a 588 617 IPR002110 GO:0005515
Cca05g01425 837 SMART ANK_2a 685 714 IPR002110 GO:0005515
Cca05g01425 837 SMART ANK_2a 718 748 IPR002110 GO:0005515
Cca05g01425 837 SMART ANK_2a 651 681 IPR002110 GO:0005515
Cca05g01425 837 PRINTS EAG/ELK/ERG potassium channel family signature 127 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g01425 837 PRINTS EAG/ELK/ERG potassium channel family signature 236 246 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g01425 837 PRINTS EAG/ELK/ERG potassium channel family signature 284 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g01425 837 PRINTS EAG/ELK/ERG potassium channel family signature 328 337 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g01425 837 Gene3D Helix hairpin bin 339 395 - -
Cca05g01425 837 ProSiteProfiles Ankyrin repeat region circular profile. 685 717 - -
Cca05g01425 837 Pfam Ion transport protein 92 337 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca05g01425 837 PANTHER POTASSIUM CHANNEL SKOR-LIKE 21 836 - -
Cca05g01425 837 ProSiteProfiles cAMP/cGMP binding motif profile. 412 532 IPR000595 -
Cca05g01425 837 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Cca05g01425 837 SMART cnmp_10 412 530 IPR000595 -
Cca05g01425 837 Pfam Cyclic nucleotide-binding domain 432 516 IPR000595 -
Cca05g01425 837 ProSiteProfiles Ankyrin repeat region circular profile. 621 652 - -
Cca05g01425 837 PANTHER POTASSIUM CHANNEL AKT1 21 836 IPR045319 GO:0005249|GO:0006813
Cca05g01425 837 MobiDBLite consensus disorder prediction 1 30 - -
Cca05g01425 837 ProSiteProfiles Ankyrin repeat profile. 621 653 IPR002110 GO:0005515
Cca05g01425 837 MobiDBLite consensus disorder prediction 1 25 - -
Cca05g01425 837 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Cca05g01425 837 SUPERFAMILY Voltage-gated potassium channels 85 337 - -
Cca05g01425 837 Pfam KHA, dimerisation domain of potassium ion channel 763 832 IPR021789 -
Cca05g01425 837 Gene3D Jelly Rolls 396 535 IPR014710 -
Cca05g01425 837 Gene3D - 92 338 - -
Cca05g01425 837 Gene3D - 655 748 IPR036770 -
Cca05g01425 837 ProSiteProfiles Ankyrin repeat region circular profile. 588 620 - -
Cca05g01425 837 Gene3D - 545 654 IPR036770 -
Cca05g01425 837 PRINTS Ankyrin repeat signature 589 604 IPR002110 GO:0005515
Cca05g01425 837 PRINTS Ankyrin repeat signature 701 715 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01425 Cca-Chr5 32747702 32762450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01425 659 738 Ion Channels AT5G37500 36.275 5.67e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01425 K21867 - gmx:100814385 1549.26