Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01424 ATGTCTTTCGCTCTCATCGAAGCCTGCAAGAAGCGAAAACGGTGGCCCAAGTTTTTCAGGTTTCACTCCTTCGCCGAACCCGGTAACCCCGTTGCGCCGTTGGGTCCCTTCCGCGATAACGTTCGGGTTTTCCTCCAAGAAGCTGGTGAACTCGAAGATTATAATGTGGCCGGGAATTCTCTCTGGTGCACCCTTCTCATTCACGATAAGTCCAACGTTATGGCTCCTCTCTACACCATCGAAGAGCACGTGCACCATTCTTCGCACCCCTTCTGTGATCACTGCCGCTGCGTAGGTTGGAGTGGTCATTTTGTATCGAAGAGAAGGTATCATTTTATAATCCCGATGGACAACGGGTGGCATAAACCCTTAGATGAAGGTGCTATAGACAAGCAGAGTCACCTATTGCATGGCGTGATTCATTGTAATGGTTATGGCCATTTGCTCTGTGTCAATGGCATTGAAGGAGGTTCCAAGGTTCTAAGTGGGAGAGAGGTCATGGATCTCTGGGACCGGATATGCACCAATCTCCGAGCACGGAAAATTGCAGTGGAAGATGTTTCATGTAAGAGGTCTATGGATCTTCGCTTACTCCATGGAGTTGCCTATGGACACTCTTGGTTTGGTAGGTGGGGTTATAGATTTTGCCGTGGAAGCTTTGGTGTGACAGAGCAAGACTACGACGAAGCAATGACAATGCTTGGTTCATTGGAGCTTGACATGATTGTGAAAGAATTGAGAAAGACAAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTACAGAGATATGAGTGAGACTCATATTATCTCGCTCAGGGATCTTCTCAGGTTTATGCTAATTGTCAAGTCTCCTCGTGCTCCTGTGTCTAAGATAACAGTCACTTATTCTGCTGCTGCTGCTGATGATTCTTGTTCTTCAGCAATCATCTTAAGAAATTCCACCAAACACCAACTTCCAAGCAGATCAAGTTCCATGAAGGATAAATCAGTGAGGTATAGGAAGTTCAGCAGTGCGGTGTCTAACATGGATAGCAGGTGGCCCACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGATGCGCTGAAAGATAACATGGCTGTGAGACCAGGCTCAAGTGGGATGGCAAGGCAAGATGTGAGAGACGCAGCTAGGCTTCACATTGGTGACACAGGCTTACTTGATTATGTACTTAAATCACTCAACAATGTGATTGTTGGAAACTACGTTGTTCGCCGCATGGTGAATCCATCAACTAGAATCCTAGAGTACACCATTCATGATCTTGGCAAGGGGCATAAGTGCAAAGCCCCTGAACTGGAGCATGAGCTGATGACTTATGTAGATCAACAAGAAGAGTCATCTTGGGTGCCTGGTAATGATGTTTACTGTGATGTATTGTTTCTGTATAAGAATGTGCTATTGGGTTATCCAGATTCAGAAGCAGTGGACTTGGCAATTCAGACCATTCTAGACTGCAGGTACTTCGTGAAAGAGTGGCCAATGAGGGGTGAAATGGAGGAGCAGGTATTGACATTCATTTGCCGCCTGCAACCAAATTTTGTGGACATGAAATATGAGTTGAAAAGCGTACCATGTGGAGAGGTTGTGGTGGTTTCACTTCATGCAACTGTTGGGGACTTGAAGAGAGCTGCTGAGGCTGCGCTGAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAAGAATTGATGGGAGTGAGTGATGAGGAAGTGCTTTTTGGACTAATCCAATCTGGTGTGGAACTTTGTGTGAGGGGAATTGCAGTAGACTTGTGCACCCCATTGAAGTATCAGGGTGGATCTGATAGCTGGAAGGTGAGATGTGAGTGTGGAGCTCAAGATGATGATGGGGAAAGAATGGTGGCTTGTGACATTTGTGAGGTGTGGCAGCATACACGCTGTTGTGGCATAGATGACTCTGAGACAGTGCCACCACTGTTTGTCTGCACTGGTTGCTGTGATTCACTTGTACCCTCCAGGATTGAATCAGCCTTTTGTTCGGATTCTGATGATTCTTTTCTGATTTCAACAGACCCTACCCTTTTACTAGAATATGAATATGGATACTAA 2109 0.4571 MSFALIEACKKRKRWPKFFRFHSFAEPGNPVAPLGPFRDNVRVFLQEAGELEDYNVAGNSLWCTLLIHDKSNVMAPLYTIEEHVHHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNGWHKPLDEGAIDKQSHLLHGVIHCNGYGHLLCVNGIEGGSKVLSGREVMDLWDRICTNLRARKIAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEQDYDEAMTMLGSLELDMIVKELRKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLIVKSPRAPVSKITVTYSAAAADDSCSSAIILRNSTKHQLPSRSSSMKDKSVRYRKFSSAVSNMDSRWPTRRLEFAAQVIVDALKDNMAVRPGSSGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKGHKCKAPELEHELMTYVDQQEESSWVPGNDVYCDVLFLYKNVLLGYPDSEAVDLAIQTILDCRYFVKEWPMRGEMEEQVLTFICRLQPNFVDMKYELKSVPCGEVVVVSLHATVGDLKRAAEAALRDTYCIAERLIVTDIKELMGVSDEEVLFGLIQSGVELCVRGIAVDLCTPLKYQGGSDSWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRIESAFCSDSDDSFLISTDPTLLLEYEYGY 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01424 702 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 673 - -
Cca05g01424 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 670 IPR013083 -
Cca05g01424 702 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 673 - -
Cca05g01424 702 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
Cca05g01424 702 CDD PHD_MMD1_like 621 665 - -
Cca05g01424 702 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Cca05g01424 702 SMART PHD_3 620 666 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01424 Cca-Chr5 32738145 32740966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01424 10 671 PHD Transcription Factor Family AT5G22260 34.078 7.99e-122 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01424 - - gmx:100797388 1200.65