Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01422 ATGGTTCTGTCATGGACAAGAGGGAGAGTGTTCCGGCGTGCCCGGAAGGGCAAAGAGTTGAACTCCGGTGGCGATTTGGAGATAGAGATTGCGATTCCCACTCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAGGACCCTGTGACCGTGTCCACGGGGATAACCTACGACAGGGACAGCATCGAGAAGTGGATCGAATCCGGGAACCGCACGTGCCCGGTAACCAAAACGGAGTTGACCAACTTTGACATGATCCCCAACCACGCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTTTCCCCGTACGAGGTAACCGACACGTGTACGAGGATCCTGTCGGCGGCTCAAAATGGGGACGAGAACAAGTGCGTGGAGTTGGTGAGGAAGGTTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGATGCATAGTGGCTAATAACGCTTCTCTCGCGCTTGCTAATGCGTTCAACTCTTTCTCCTCACGCGGGTTGGTTGAGATTGAGAAGAACGTGGTTGCGTTGGACGAGATTCTTGGGGCGTTGACGTGGATGCGTCCTCTTTCCGAAGAGGGAAGATCCGTGTTGGGTTCAGCGAGTTCCATTGCTTGCATGGTTTGGTTCATGAACGGTAAACAATTGTCCACGAGGCAGAACGCTGCTTTGTTGCTCAAGGAGATGCGTGTTGAGGCTTTGGTCAATAGTGTGGGAGTTTTTGAGGCTTTGGTTAACATGGTTAAGGAGCCTCTGGGGAGTGCTTCCACCAAGGCATGTTTGTCAACGATTTTCAACTTGGTTTCTTCTAGCAGAGGTGTGACATGTGAAAGGTTTGTTGAGTTGGGTTTGGTTCCGCTCTTGTTGGAGATTCTTGTTGACGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGAGTGTTGGATTGCGTTTGTGATTGCAAACAAGGGGTGGAGGTGGCGAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTGTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCGGTTTCGATTCTTTGGAAGGTTTGTGATAAGAACGAGGAAGGGGTGTTGGTTGAGGCGCTTCAGATGGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGGTGTGGTGAAGGCACTAAAGAGAAGGCTACTGAGTTGTTGAAGTTGTTGAATGGTTGCAGGAGCAAAGCCGAGTGTGTTGATTCATCCTTGGATTTCAAGCACTTGAAGAAGCCATTCTGA 1308 0.5107 MVLSWTRGRVFRRARKGKELNSGGDLEIEIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTNFDMIPNHAIRRMIQDWCVEHRSYGIERIPTPRIPVSPYEVTDTCTRILSAAQNGDENKCVELVRKVKAWGKESERNKRCIVANNASLALANAFNSFSSRGLVEIEKNVVALDEILGALTWMRPLSEEGRSVLGSASSIACMVWFMNGKQLSTRQNAALLLKEMRVEALVNSVGVFEALVNMVKEPLGSASTKACLSTIFNLVSSSRGVTCERFVELGLVPLLLEILVDAERGVCEKALGVLDCVCDCKQGVEVAKANALTLPLVIKKLLRVSELSSSFAVSILWKVCDKNEEGVLVEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNGCRSKAECVDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01422 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Cca05g01422 435 PANTHER WDSAM1 PROTEIN 7 435 IPR045185 GO:0061630
Cca05g01422 435 CDD RING-Ubox_PUB 36 77 IPR045210 -
Cca05g01422 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Cca05g01422 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Cca05g01422 435 Gene3D - 215 425 IPR011989 -
Cca05g01422 435 SUPERFAMILY ARM repeat 128 416 IPR016024 -
Cca05g01422 435 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 435 - -
Cca05g01422 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Cca05g01422 435 SUPERFAMILY RING/U-box 28 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01422 Cca-Chr5 32727958 32730028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01422 27 435 U-box Gene Family AT5G37490 46.635 3.09e-125 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01422 - - gmx:100795913 756.518