Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01421 ATGCAATATGCACTCTCACATCACACTCCTTCTCTAACTAAACCAAACAACAACATGTACCCTCTGGCAGCCGTCGCCATGTTGATCTTCCTCGTCATGGCAACCTCCGAAGCCGACGACACAGCAGCAATGCTCTCCCTCAAGGAAGCCCTCAACCCGCCGGGATGGTCCGACCCCAACCCCTGCAACTGGCCCCACGTCGGATGCTCCGACGAGAACCGGGTGACCCGGATCCAAATCGGGCGCCTCAACCTCCAAGGCACGCTCCCCAACGCCCTCAACAACCTCACTCACTTGCAGCACCTCGAGTTCCAGTTCAACAACATCTCCGGCCCCCTCCCCTCCCTCTCCGCCCTCACCAACCTCCGCGTCCTCATCGCCGCCAACAACCGCCTCACCGCCCTCCCCTCCGACTTCCCCGCCGCCCTCTCCCAGCTCCAAGCCCTCGAGATCGACAACAACCCCTTCCAGCCCTGGCACATTCCCCACTCCCTCCCCAACGCCTCTTCCCTTCAGAACTTCTCCGCCAACTCCGCCAACCTCATCGGCACCCTCCCGGACTTCTTCTCCTCCGACGCCTTCCCCGGCTTGACCCTTTTGCACCTCGCCTTCAACAGCCTCGAGGGAACCCTTCCCTTCAGCTTTGCTACCTCCCAGATTCAGTCTTTGTGGCTGAATGGGCAGAAGAGTGAGAATAAGCTTGCTGGGACTCTTTCTGTTCTGCAGAACATGACTTTTTTAACCGAGGCTTGGTTGCATTCAAATGCCTTCACCGGCCCCTTGCCCGATTTTTCCACCTTCAACAGTTTGCAGGTTTTGAGTTTGAGGGATAACAGGCTTACCGGCCCTGTTCCGGGGTCCTTGCTGGGGCTTAAGTCGCTTAAAGTTGTCAACTTGACTAATAATTTTTTTCAGGGTGCAATGCCTGTGTTTGGGGATGGGGTTGAGGTGGACAATGGGAAGGATTCCAATAGTTTTTGTTTGCCGGGTCCTGGGGATTGTGATCCCAGGGTGGGGCTGCTTCTTTCTGTTGTCAGGTCTTTTGGGTATCCTCAGAGGTTTGCTGAGAGTTGGAAGGGGAATGATCCTTGTTCTGATTGGATTGGGATTACTTGTAGTGATGGGAATATAACTGTTGTTAATTTTCAGAAGATGGGGCTCAGTGGTGTGATATCGCCCGAGTTTGCTAAGATTAAGTCCTTGCAGAGGCTTGTGCTGGCTGATAACAATCTCACTGGTGTGATTCCGCAGGAGCTTGCTACTTTGCCTGTGCTTACTCAATTGAATGTTGCCAACAATAGGCTTTATGGGAAGGTGCCCAGTTTTAAGAGTAATGTGGCTGTGACTACGACTGGTAATGTTGATATAGGGAAGGATAAGAGCAGTGAGTCACCTCAGGGTTCGGTGTCTCCCGCGGACGCCAAGGGAGGAGATGGTGGAGGTTCGGGATATGGTGGAAGAAAGTCTTCTTCCCATGTGGGAGTGATCGTGTTTTCAGTGGTAGGAGCTGTGTTTGTTGTTTCAATGATTGGTTTCTTGGTTTTCTGCTTGTTTAGGATGAAGCAAAAGCAGTTGAGCAGGGTCCAGAGCCCTAATGCGCTGGTTATTCATCCCAGGCATTCTGGATCGGATAACGAGAGTGTGAAGATAACGGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAGACGCAAACCATTCCCGGCAGCGAGGTGGGAGATATTCAAATGGTTGAAGCGGGAAACATGGTCATTTCCATTCAAGTCCTGAAGAATGTCactaacaatttcagtgagaagaatatattgggacaaggtggctttggaactgtttataaaggtgaactccacgatggtacaaggattgccgtgaagagaatggagtccggggcgataactgggaagggtgccgcagaattcaagtctgaaatcgctgttttgaccaaggttcgccacaggcatcttgttgctcttcttggttactgtttggatgggaatgagaagcttcttgtgtacgagtacatgcctcaggggacgctaagtaggcatctttttaactggccagaggaaggattggaaccactggagtggaatagaagattgaccattgccttggatgtggcaaggggtgttgagtacctccatggtttggcccatcaaagcttcatacacagggacttaaaaccttcgaacattctccttggagatgatatgagggccaaggttgctgattttggtcttGTGCGGCTTGCTCCAGAAGGAAAAGCCTCTATAGAAACAAGAATTGCTGGAACTTTTGGATATTTGGCGCCAGAGTATGCAGTTACAGGTCGTGTGACAACTAAGGTTGATGTGTTCAGCTTTGGAGTAATACTGATGGAGCTGATGACAGGAAGAAAAGCGCTTGATGAAACCCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAATAAGGACTCATTCCGCAAGGCCATTGACCCCACAATTGAGCTCAATGAGGAAACGCTAGCCAGTATTCACACCGTAGCCGAGTTAGCAGGCCACTGCTGCGCAAGGGAGCCATATCAAAGACCTGACATGGGTCATGCTGTTAATGTGCTTTCTTCTCTTGTGGAACTCTGGAAACCATCTGATCTAAACTCCGAAGATATATATGGCATTGACCTTGACATGTCCTTACCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGtcttcttcttcctcctctcttcttcCAAGCTTGGATAACACACAAACAAGTATACCTACACGCCCTTATGGATTTGCTGATTCTTTCACGTCAGCAGATGGTAGGTGA 2859 0.4222 MQYALSHHTPSLTKPNNNMYPLAAVAMLIFLVMATSEADDTAAMLSLKEALNPPGWSDPNPCNWPHVGCSDENRVTRIQIGRLNLQGTLPNALNNLTHLQHLEFQFNNISGPLPSLSALTNLRVLIAANNRLTALPSDFPAALSQLQALEIDNNPFQPWHIPHSLPNASSLQNFSANSANLIGTLPDFFSSDAFPGLTLLHLAFNSLEGTLPFSFATSQIQSLWLNGQKSENKLAGTLSVLQNMTFLTEAWLHSNAFTGPLPDFSTFNSLQVLSLRDNRLTGPVPGSLLGLKSLKVVNLTNNFFQGAMPVFGDGVEVDNGKDSNSFCLPGPGDCDPRVGLLLSVVRSFGYPQRFAESWKGNDPCSDWIGITCSDGNITVVNFQKMGLSGVISPEFAKIKSLQRLVLADNNLTGVIPQELATLPVLTQLNVANNRLYGKVPSFKSNVAVTTTGNVDIGKDKSSESPQGSVSPADAKGGDGGGSGYGGRKSSSHVGVIVFSVVGAVFVVSMIGFLVFCLFRMKQKQLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETQTIPGSEVGDIQMVEAGNMVISIQVLKNVTNNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMESGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELMTGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDPTIELNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDLNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01421 952 SUPERFAMILY L domain-like 69 444 - -
Cca05g01421 952 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524
Cca05g01421 952 SMART serkin_6 598 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01421 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Cca05g01421 952 Gene3D Transferase(Phosphotransferase) domain 1 676 891 - -
Cca05g01421 952 MobiDBLite consensus disorder prediction 453 469 - -
Cca05g01421 952 ProSiteProfiles Protein kinase domain profile. 598 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01421 952 MobiDBLite consensus disorder prediction 916 952 - -
Cca05g01421 952 Gene3D Ribonuclease Inhibitor 337 460 IPR032675 -
Cca05g01421 952 PANTHER OSJNBA0070M12.3 PROTEIN 24 952 - -
Cca05g01421 952 Gene3D Phosphorylase Kinase; domain 1 559 675 - -
Cca05g01421 952 Pfam Leucine rich repeat N-terminal domain 341 373 IPR013210 -
Cca05g01421 952 Pfam Leucine rich repeat N-terminal domain 38 70 IPR013210 -
Cca05g01421 952 SUPERFAMILY Protein kinase-like (PK-like) 575 882 IPR011009 -
Cca05g01421 952 MobiDBLite consensus disorder prediction 916 941 - -
Cca05g01421 952 PANTHER RECEPTOR PROTEIN KINASE TMK1 24 952 - -
Cca05g01421 952 Gene3D Ribonuclease Inhibitor 37 334 IPR032675 -
Cca05g01421 952 CDD STKc_IRAK 604 877 - -
Cca05g01421 952 MobiDBLite consensus disorder prediction 453 485 - -
Cca05g01421 952 Pfam Protein kinase domain 599 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01421 Cca-Chr5 32711025 32715431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01421 84 880 Receptor kinase-like Gene Family AT5G07280 31.380 5.03e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca05g01421 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01421 - K00924 aprc:113846741 1557.73