Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01419 ATGACCTTGGAGGGGATTTTCATTGAGCCTACTTCAACCACTGCTCCTGATCTTTCCCTTCACATAAGCCCCCCAAGCATCTCATCCTCTTCCTTGATTTCCAATAACACCACCAATTATGAACCCCAACCAAGTTTCCCTTCAAGGAGTACCGTCTCTCAAGCCCACACAGAACTCTCTTTAGGAAGAAATTTCACTTcaacaccaacaccaacaccaacacaaccacataacccttattaccaaaaccaaacccctttccatcatcttcaccacaacaacacTACTAGTACTGCTACAACAAGTGGTGTGAATGTTATTACAAGTACTAGCACCACTAGTACACCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTGTCATCATCAGAGGGGTTGAGGCCAATCAAGGGGATCCCGGTGTATCACAACCGTTCATTCCCTTTCATGGCCATGGACCATGCTAGAGACAAGGATCATCACCACCACCCTCACAAGATGTGCCTATATCATCACAATCACATGCcttcttcttattcctctctctcttgttcatgtactccttcttcttcaccttcaccttacttTGCAGCGGGTGTGGATCCCATGTCCCTCTTGAACAACGGCTCCACCCCGGCCTGTAGGGCCGCCACTGCCACAAGGTTTAATGGGTTCTCTGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGAGTTGGCACCTCAGAAGCCTCTTCTGGGTTAATGAGATCAAGGTTTTTGCCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCAAGAATGAGGTGGACTAGCACCCTCCATGCTCGATTTGTTCATGCGGTTGAACTTCTTGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAGCTGATGGATGTGAAGGATCTAACATTAGCTCATGTGAAGAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGCCAATCAGATGGGTCTGGAGAGGATGAGTTGTCTCCGATTGGTAGCACTGCCGATCGCGGCAGTCTCCGGCAATTCCCCAACCACCAAGGGCGGCCGGAGTGGACGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTATGGAGTAATTCCTCAAGTTGTGGAGAGTCACGGCTAAGAACCAATTCTAACGACATAGATGGTCTCAGATCACCTATCCTCCAGTCACAAACAATATCAGCAGGGCATCAAATTCAGGAGTGTGATTCAAGTCAACTCAAGAACAGCATGCCAGGTTCTAATTTGGAGTGCAAGAACCCGAGCTTGGAATTCACATTAGGAAGACCAGATTGGAATGGCAAAGAACAAGCCTAG 1380 0.429 MTLEGIFIEPTSTTAPDLSLHISPPSISSSSLISNNTTNYEPQPSFPSRSTVSQAHTELSLGRNFTSTPTPTPTQPHNPYYQNQTPFHHLHHNNTTSTATTSGVNVITSTSTTSTPLNHINYGVSLLDVSSSEGLRPIKGIPVYHNRSFPFMAMDHARDKDHHHHPHKMCLYHHNHMPSSYSSLSCSCTPSSSPSPYFAAGVDPMSLLNNGSTPACRAATATRFNGFSGDAFKSHPLHQYGVGTSEASSGLMRSRFLPKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDELSPIGSTADRGSLRQFPNHQGRPEWTAQQDMDYSSTTTLWSNSSSCGESRLRTNSNDIDGLRSPILQSQTISAGHQIQECDSSQLKNSMPGSNLECKNPSLEFTLGRPDWNGKEQA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01419 459 MobiDBLite consensus disorder prediction 1 56 - -
Cca05g01419 459 MobiDBLite consensus disorder prediction 325 401 - -
Cca05g01419 459 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 459 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cca05g01419 459 SUPERFAMILY Homeodomain-like 266 322 IPR009057 -
Cca05g01419 459 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 269 322 IPR006447 GO:0003677
Cca05g01419 459 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 459 - -
Cca05g01419 459 MobiDBLite consensus disorder prediction 351 401 - -
Cca05g01419 459 MobiDBLite consensus disorder prediction 325 343 - -
Cca05g01419 459 Gene3D - 268 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01419 Cca-Chr5 32677065 32683607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01419 1 456 G2-like Transcription Factor Family AT5G16560 39.200 1.90e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca05g01419 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01419 - - gmx:100796325 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01419 05 32677065 32683607 Cca05g01419 05 32677065 32683607 ECH