Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01412 ATGTCGCTTCTTTCATTGAACAGCCTCCACTCAACGCTCTTCATGTTTTGTTTCATTAACGTTGTAACCGCCGCCACCGAGTTCGACTTCGGAACCTTAACCTTGGGAAGCCTTAAGCTCCTCGGCGACGCGCACTTGAACAACGGCACCGTCAGCCTCACGCGCGACCTCGCCGTTCCCACCTCCGGCGCCGGCAGAGCTCTTTACTCCCGTCCGGTGAGATTCCGGCAACCGGGAAACCGTTTTCCGGCGAGCTTCACCACTTTCTTCTCCTTCTCCGTCGCCAACCTCAACCCTTCCTCCATCGGCGGCGGCCTCGCCTTCCTCCTCTCGCCGGACGACGAGACTATCGGCGACGCGGGTGGATTCCTCGGACTTTCCGGCGGTGGCGGCGGTGGTGGCGCGTTCCTCGCCGTGGAGTTTGATACACTGATGGACGTGGAATTTAATGACATTAACGGTAATCATGTTGGGGTGGACTTAAACAGCGTGGTTTCGAGCGAGGTTGGTGATTTGGCTAGCATTGGGATCGATCTGAAAAGTGGTGACTTGATTAACGCGTGGATCGAGTTTGATGGATCGAGTAAAGGGTTAAGCGTGTGGGTTTCGTACTCCAATCTCAAACCGAAAGATCCCTTTTTGACGATGAATCTCGACGTGGATAAGTATTTGAATGATTTTATGTACGTGGGGTTCTCTGGTTCCACGCAGGGTAGCACAGAGGTTCACAGAATAGAGTGGTGGAGTTTTGGTTCGTCTTTTGAGTCCGCGGCGGCGGGGCCGGGGAAGGGAGCGGCTCCGCCGCCGCCGCCGACGGTGAGTTTGATGAACCCGACGGCGAATTCGGTGAGGTCGGCGCCTCCTTCCTTGGCTCCTTCTAATAGTGAAGAGAAAGAGAGCAAAAGCAAATCTTGCCATAATGGGTTGTGTAAGCAGAATTTGGGAGCGGTTGCTGGTGTTGTCACTGCGAGTGCATTTGTTTTGGCTCTCTTTGCTGGTGCGTTGATTTGGTTTTACTCTAAGAAGGTTAAGCGTGTTAATGACAAGTTTGATTCGGTTGGATCGGAGATCATAAAAATGCCGAAGCAGTTTAGCTACAAGGAGCTGAAGTCAGCCACCAAGTGCTTCAATGCGAATAGGATCATTGGTCATGGGGCGTTTGGGACTGTTTACAAGGGGGTTTTGGCTGAGAATGGGGATATTGTTGCGGTGAAGAGGTGCAGCCATAGTAGTCAGGGGAAGAATGAGTTTTTGTCTGAGTTGTCTATAATAGGGAGTTTGAGGCACCGGAATCTTGTTAGGCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGCTGGTGTATGACTTGATGCCTAATGGGAGTTTGGACAAGGCTTTGTTTGAGGCTAGGACGCCGCTACCGTGGCCTCACCGGCGCAAGATTCTCTTAGGTGTGGCGTCGGCGTTGGCCTACTTGCATCAGGAGTGTGAGAATCAGGTGATTCATAGGGACATTAAGACTAGTAACATAATGTTGGATGAAGGGTTCAATGCACGGTTGGGAGATTTTGGTTTGGCAAGGCAAACTGAGCATGATAAGTCGCCTGATGCAACAGTGGCTGCAGGGACAATGGGGTATTTGGCACCTGAGTATCTTCTCACGGGGAAGGCTACAGAGAAAACTGATGTGTTTAGTTATGGTGCAGTGGTTCTTGAGGTGGCTAGTGGGAGAAGGCCAATAGAGAAGGATGCAAATGGGGGTGGTAAAGGTGGGATTAGCTGCAATTTGGTGGAATGGGTGTGGAGTTTGCACCGCGAAGGCCGGTTGCTAATGGCGGCTGATCGGAGGCTTGAGGGTGAGTTTGATGAGGGGGAGATGAGGAGGTTGCTCTTGGTTGGGCTAGCTTGCTCTCACCCTGATCCATTGGCTAGACCTACAATGAGAGGTGTGGTTCAGATGCTGGTTGGTGAGGCTGAAGTGCCTATTGTCCCAAGAACAAAGCCATCCGCAGGTTTTAGTACTTCACACTCCCACTTGTTACTCAGCTTGCAAGATAGTGTATCTGATTGTGATGGTATAATCACCATCTCTACCTCCACATCAGAGGACAGCTTCAATCTTGGAGATTTAGTATGA 2121 0.512 MSLLSLNSLHSTLFMFCFINVVTAATEFDFGTLTLGSLKLLGDAHLNNGTVSLTRDLAVPTSGAGRALYSRPVRFRQPGNRFPASFTTFFSFSVANLNPSSIGGGLAFLLSPDDETIGDAGGFLGLSGGGGGGGAFLAVEFDTLMDVEFNDINGNHVGVDLNSVVSSEVGDLASIGIDLKSGDLINAWIEFDGSSKGLSVWVSYSNLKPKDPFLTMNLDVDKYLNDFMYVGFSGSTQGSTEVHRIEWWSFGSSFESAAAGPGKGAAPPPPPTVSLMNPTANSVRSAPPSLAPSNSEEKESKSKSCHNGLCKQNLGAVAGVVTASAFVLALFAGALIWFYSKKVKRVNDKFDSVGSEIIKMPKQFSYKELKSATKCFNANRIIGHGAFGTVYKGVLAENGDIVAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDANGGGKGGISCNLVEWVWSLHREGRLLMAADRRLEGEFDEGEMRRLLLVGLACSHPDPLARPTMRGVVQMLVGEAEVPIVPRTKPSAGFSTSHSHLLLSLQDSVSDCDGIITISTSTSEDSFNLGDLV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01412 706 ProSitePatterns Protein kinases ATP-binding region signature. 382 405 IPR017441 GO:0005524
Cca05g01412 706 Gene3D Transferase(Phosphotransferase) domain 1 452 655 - -
Cca05g01412 706 Gene3D - 24 262 - -
Cca05g01412 706 MobiDBLite consensus disorder prediction 276 295 - -
Cca05g01412 706 Pfam Legume lectin domain 27 257 IPR001220 GO:0030246
Cca05g01412 706 PANTHER - 16 697 - -
Cca05g01412 706 MobiDBLite consensus disorder prediction 259 304 - -
Cca05g01412 706 SUPERFAMILY Protein kinase-like (PK-like) 358 671 IPR011009 -
Cca05g01412 706 Pfam Protein kinase domain 377 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01412 706 CDD lectin_legume_LecRK_Arcelin_ConA 26 254 IPR001220 GO:0030246
Cca05g01412 706 ProSiteProfiles Protein kinase domain profile. 376 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01412 706 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 258 IPR013320 -
Cca05g01412 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Cca05g01412 706 CDD STKc_IRAK 382 649 - -
Cca05g01412 706 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 16 697 - -
Cca05g01412 706 Gene3D Phosphorylase Kinase; domain 1 339 451 - -
Cca05g01412 706 SMART serkin_6 376 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01412 Cca-Chr5 32565877 32568702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01412 14 688 Receptor kinase-like Gene Family AT3G53380 69.825 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca05g01412 Pkinase 8.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01412 - - gmx:100793157 1184.09