Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01411 ATGGTTCTTTCGAAAACTGCCTCTCAGACAGATGTCTCTGTCCATTCAACCTTCGCCTCTCGCTATGTCCGCGCCTCCCTCCCCAGGTTCAAGATGCCGGAACAATCGATTCCGAAGGAAGCGGCGTACCAGATCATAAACGACGAGCTGATGCTTGACGGGAACCCTCGGCTGAACCTGGCCTCCTTTGTGACGACGTGGATGGAGCCTGAATGCGACAAACTCATCATGGCTGCCATCAACAAAAACTACGTCGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAACCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAGTCAGAAACTGCAGTTGGTGTTGGCACCGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTAGCATTCAAAAGGAGGTGGCAAAACAGAAGGAAACAAGAAGGGAAGCCAATTGACAGTCCTAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAGGCTGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCGGCCATCCTTGGTTCCACTCTGAATGGAGAGTTTGAAGATGTTAAGAGCTTAAACGATCTCCTCCTGGCAAAGAATGAGGAAACTGGATGGAACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCCTTTCTTTATCCAGAGCTAGAGTGGGATTTTCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAAGCAAGGAAGACCTTCCTGACGAACTCATTTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTCATTCGATTGGGTTATGAGGGCTATAAAATGGTGATGGAAAACTGCACAGACAACATGGTAGTGCTGAAGGAAGGACTAGAGAAAACAGGGCGGTTTGCAATTGTATCGAAAGACGTTGGTGTGCCATTGGTTGCGTTCACATTGAAGGATCGTAACCACTTTGATGAATTCCAAATCTCTGATATGCTGAGGCGTTATGGATGGATAGTGCCAGCATACACGATGCCCCCAGATGCACAGCATGTGACAGTGCTACGTGTTGTGATCAGGGAGGACTTTTCTCGCACCCTCGCCGAGCGTCTTGTGAGTGATGTCACCAAAGTGTTGCACGAGCTCGATTCGCTTCCTGCTCGGGTCATCAGCAACACCGTCACTGCTGCCGGAGAAGATGTCGATAATGGGGCCAAGGTGCTCGTTGCCAAGAAGAGTGAAATTGAGACACAAAGGGAAATCACTTCAGCTTGGAAGAAGTTTGTCATGGAGAGGAAGAAGATGAACTGTGTTTGTTAA 1506 0.4761 MVLSKTASQTDVSVHSTFASRYVRASLPRFKMPEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRRWQNRRKQEGKPIDSPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKSLNDLLLAKNEETGWNTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKMVMENCTDNMVVLKEGLEKTGRFAIVSKDVGVPLVAFTLKDRNHFDEFQISDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVSDVTKVLHELDSLPARVISNTVTAAGEDVDNGAKVLVAKKSEIETQREITSAWKKFVMERKKMNCVC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01411 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca05g01411 501 Gene3D - 66 360 IPR015421 GO:0003824
Cca05g01411 501 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cca05g01411 501 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca05g01411 501 Gene3D - 361 448 - -
Cca05g01411 501 Gene3D - 1 65 - -
Cca05g01411 501 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca05g01411 501 PANTHER GLUTAMATE DECARBOXYLASE 1 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01411 Cca-Chr5 32543297 32549600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01411 1 501 Calmodulin-binding Proteins AT5G17330 83.068 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01411 K01580 - gmx:100791696 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01411 05 32543297 32549600 Cca05g01411 05 32543297 32549600 ECH
Cca01g00448 01 5550413 5551701 Cca05g01411 05 32543297 32549600 PCT