Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01410 ATGATGCCCAAACCTTTCAATTTTCCCGCCAAACGCACAACCGCACTTTTCCTCCTAAccgcaaccaccgccgccgccgccgccgcACAAACCACCAACTCCGCCGTTCCCTCTCCCCTCCCCGCGTTCTCTGCCGACAAACTCGGAGGCGAAATCCACGGCCTCATCCGCACCGCTCGTGCCGTCTCGGCGGTTGCTTCCACCGTCGTTGACTACGAATTCTCGTTGCGCGGCCTTCACAAGGACTCCGACCAGTACCGTCGAGCGATTTCCCAGGTTCATCTACGCTCTGCCGAGAGGTTTCTCAAGTTATGCGAAGCCAACAAAGGGTTTTACGTGAAGGCTGGACAGTTCGTTGCTTCGCAGAAAGTGCTTCCTAAAGAGTATTCGTCCACTTTGTCTTCATTACAGGACCAGCCTATAGCCGCTGCATCTATTGCTCAAGTTCACCATGCAGTGCTGAAAAGTGGACATGAAGTAGCAATCAAGGTACAATATCCTTGGATAGAGCAGCAGATGAATTTTGATACAAGGACAATGTATTTCCTATCAAAAACTATTGCATGGTTATACCCTCAATACAGGTTTGATTGGCTACCATTAACGTTTGCCAAGTCTGTGTCCTCAGAACTTGATTTTGTTCAGGAGGCAAGGAATTCTGAGATAGCAGCCAAAAATTTCAAAAATAACAAAATGGTCAGAATTCCTCATGTATTCTGGGACTTGACAACAAGGCAAGTCCTAACCATGCAGTTTTATACAGGACACAAGATTGATGACTTGGATTTTCTGAATCAGATTGGGGTTGATCCAGAAAAGGTAGCAAAATCACTGACTGAGCTGTTTGCTGAAATGATATTTGTACATGGTTACATACATGGTGATCCACACCCTGGTAATATATTAGTTTCTCCCGAAGGTTGTAATGGTTTCTCTTTGGTTCTTCTAGATCATGCAGTCTACACGACATTGGATGATGAATTCAGAAAAGATTTTTGTCAATTATGGGAAGCTTTAATTCTCAAGGATTCAATGAAAACAATGCAGCTTGGTGAGCGATTTGGTGCCAGGAAGTATTCCAGATACTTACCCATCATTTTCACTGGAACAACCATTGAAAGCAAAAATGTTGTTGGCATATCAATCAAAGAAAAAGAGACCTTGAAACACGAATTGAAAAGTCTGTTGTTTGAGGACGTATCTTCATTCATGGAGTCTCTGCCCCCAGATTTTATTGCTATACTGCGTGTAGATGCACTGTTGAGGTCTATCATTAGAAAGATGGATGTCTCACGGGTCACGAGGTTGCTAACTTACACTAAATATGCGGTGTATGGTCGTCTCTGTCTAAAGTCGAATGGTGAAGGCGAATCGTGTAAAATACTCGGAACAAACTTGTATTTTAATGCGAAAGCTGGTTTTTTCAGTTTCATATCAACGATAAAATATCTCCACATCCTAATTACGGTCTTTATAGGGACCATTGATGTTATCCCTTGGAAGCAGAAGTTGAAAAGTGTACAGAAATACTTGTACAGCAAGATCAGTTGCGACTCTTTTGGCTGCCTGGTGCATTCCGTTTTTCTCCTTTTATGTATCAGTCGTAATACATTGTTTTAG 1620 0.4185 MMPKPFNFPAKRTTALFLLTATTAAAAAAQTTNSAVPSPLPAFSADKLGGEIHGLIRTARAVSAVASTVVDYEFSLRGLHKDSDQYRRAISQVHLRSAERFLKLCEANKGFYVKAGQFVASQKVLPKEYSSTLSSLQDQPIAAASIAQVHHAVLKSGHEVAIKVQYPWIEQQMNFDTRTMYFLSKTIAWLYPQYRFDWLPLTFAKSVSSELDFVQEARNSEIAAKNFKNNKMVRIPHVFWDLTTRQVLTMQFYTGHKIDDLDFLNQIGVDPEKVAKSLTELFAEMIFVHGYIHGDPHPGNILVSPEGCNGFSLVLLDHAVYTTLDDEFRKDFCQLWEALILKDSMKTMQLGERFGARKYSRYLPIIFTGTTIESKNVVGISIKEKETLKHELKSLLFEDVSSFMESLPPDFIAILRVDALLRSIIRKMDVSRVTRLLTYTKYAVYGRLCLKSNGEGESCKILGTNLYFNAKAGFFSFISTIKYLHILITVFIGTIDVIPWKQKLKSVQKYLYSKISCDSFGCLVHSVFLLLCISRNTLF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01410 539 SUPERFAMILY Protein kinase-like (PK-like) 133 351 IPR011009 -
Cca05g01410 539 Pfam ABC1 atypical kinase-like domain 123 349 IPR004147 -
Cca05g01410 539 PANTHER ABC1 FAMILY PROTEIN 35 139 - -
Cca05g01410 539 PANTHER ABC1 FAMILY PROTEIN 139 466 - -
Cca05g01410 539 CDD ADCK1-like 125 349 IPR045307 -
Cca05g01410 539 PANTHER AARF DOMAIN CONTAINING KINASE 1 (PREDICTED) 35 139 - -
Cca05g01410 539 PANTHER AARF DOMAIN CONTAINING KINASE 1 (PREDICTED) 139 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01410 Cca-Chr5 32532123 32542622 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01410 K08869 - gmx:100786615 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01410 05 32532123 32542622 Cca05g01410 05 32532123 32542622 ECH
Cca03g02677 03 48061650 48067120 Cca05g01410 05 32532123 32542622 PCT