Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01406 ATGTTGCCACTCACATTGTTCACACTATTCACACTCTCTTCCTCAGTCACTTCACACTTCTCCTCTCCTCCCTCTCTAGAATCTTCTGCTGCGCCCTCCTTCTCCGAGTGGCGATCCGCGCACGCCACCTACTACGCCGCCGCCGATCCCCGCGACAAGGGCGGCTACGGGATGGCCACGGTCGGCCTCAGCGAGACGCTGTTCGAGCGGGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCGTGGAGGACATGCGGTGGTGCATCCCCGGCACCTCCATCATCGTCACCGCCACCAACTTCTGCGCCCCCAACTACGGCTTCACCAACGACGGCGGCGGACACTGCAACCCTCCCAATAAGCACTTCGTTCTCCCCATCGAGGCCTTCGAGAAGATCGCCATTTGGAAAGCCGGAAACATGCCTGTGCAGTATCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATTCGATTTACGGTTACTGGTTCTGGAATCTTCATTTCAGTGCTGATTAGCAATGTTGCTGGCCACGGAGACATAGTGGCGGTGAAGGTTAAAGGTTCAAGAACTGGTTGGCTTCCAATGGGTCGCAATTGGGGGCAAAATTGGCATGTAAATGCGTTGCTGCAAAATCAACCTCTTTCGTTCGAGGTTACTGCTAGTGATGGCAAAACGGTTACGTCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGA 753 0.5471 MLPLTLFTLFTLSSSVTSHFSSPPSLESSAAPSFSEWRSAHATYYAAADPRDKGGYGMATVGLSETLFERGQICGACFELRCVEDMRWCIPGTSIIVTATNFCAPNYGFTNDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTASDGKTVTSYNVAPKDWTFGQTFEGKQFET 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01406 250 PANTHER EXPANSIN-A13 22 249 - -
Cca05g01406 250 Pfam Lytic transglycolase 61 146 IPR009009 -
Cca05g01406 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Cca05g01406 250 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Cca05g01406 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cca05g01406 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cca05g01406 250 SUPERFAMILY Barwin-like endoglucanases 30 174 IPR036908 -
Cca05g01406 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 156 IPR007112 -
Cca05g01406 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cca05g01406 250 PANTHER EXPANSIN-A15 22 249 IPR002963 GO:0009664
Cca05g01406 250 SMART dpbb_1 60 146 IPR007112 -
Cca05g01406 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cca05g01406 250 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cca05g01406 250 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cca05g01406 250 Gene3D - 156 248 IPR036749 -
Cca05g01406 250 Gene3D - 22 152 IPR036908 -
Cca05g01406 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01406 Cca-Chr5 32462053 32466633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01406 36 250 Expansin Gene Family AT3G03220 81.498 2.32e-139 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01406 - - gmx:100809568 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01406 05 32462053 32466633 Cca05g01406 05 32462053 32466633 ECH
Cca01g00475 01 5924719 5928458 Cca05g01406 05 32462053 32466633 PCT