Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01403 ATGTCAAAGGGAGACAAGCTTGAGGTTTTGGACTTTTGGGCCAGCCCATATTGTGGGAGAGTGAAAATTGCTTTGGAGGAGAAAGGGGTGAAGTATGTGGCTAGTGAGGAGGATGTGTTTGGGTGCAAGAGTGATCTTCTGCTCAAGTCAAATCCAATTCATCAAAAAGTTCCCGTGCTCTTGCACAATGATAAACCTATCGTTGAGTCTGCTATCATTGTTACCTACATTGATGAAGTCTGGCCTTCCAACTCACTGCTTCCAACTAGTGCTTATGATCGTGCCCAAGCTCGATTCTGGGTTGATTACATTGATAAAAAGGTATTCGAGACCGGAAGGAGTGTATGGGGGAGCAATGGAGAAGAGCGAGAAGTGGGCACTAGGGACTTCATTGAAGTTATAAAGCATCTTGAGGAAGCTCTTGGGGAGAAGAACTATTTTGGTGGTGAAGCCTTTGGGTATGTGGACATCATAGCCATTTCTCATTCACCTTGGTTTTTGGCTTATGAGAAGCTTGGAGGCTTCAAAATTCAAGACCATACACCAAAACTCTCAGCTTGGATTAAAAGGTGTTTGAAGAGGGAGTCTGTTGCCAAAGTTCTTCCAGACCCAGAAAAGGTCTATCAATTTGTCCTTCATTTTAGGAAGATGTCAGGACTTGATTAA 666 0.4354 MSKGDKLEVLDFWASPYCGRVKIALEEKGVKYVASEEDVFGCKSDLLLKSNPIHQKVPVLLHNDKPIVESAIIVTYIDEVWPSNSLLPTSAYDRAQARFWVDYIDKKVFETGRSVWGSNGEEREVGTRDFIEVIKHLEEALGEKNYFGGEAFGYVDIIAISHSPWFLAYEKLGGFKIQDHTPKLSAWIKRCLKRESVAKVLPDPEKVYQFVLHFRKMSGLD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01403 221 SFLD Main.3: Omega- and Tau-like 4 218 IPR045073 -
Cca05g01403 221 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Cca05g01403 221 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 8 214 - -
Cca05g01403 221 CDD GST_C_Tau 91 214 IPR045074 GO:0004364|GO:0006749
Cca05g01403 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Cca05g01403 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 85 IPR004045 -
Cca05g01403 221 Gene3D Glutaredoxin 1 89 - -
Cca05g01403 221 CDD GST_N_Tau 7 81 - -
Cca05g01403 221 Pfam Glutathione S-transferase, C-terminal domain 132 195 IPR004046 -
Cca05g01403 221 Gene3D - 90 221 - -
Cca05g01403 221 SFLD Glutathione Transferase (cytosolic) 4 218 IPR040079 -
Cca05g01403 221 SUPERFAMILY GST C-terminal domain-like 79 217 IPR036282 -
Cca05g01403 221 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Cca05g01403 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 214 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01403 Cca-Chr5 32446865 32448869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01403 4 221 Glutathione S-transferase Gene Family AT1G17180 54.795 5.74e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01403 K00799 - gmx:100788517 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01403 05 32446865 32448869 Cca05g01403 05 32446865 32448869 ECH