Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01401 ATGGCACCTGTTTTGCCTCCTGGTTTCAGATTCCACCCTACTGATGAAGAACTTGTTGCTTATTACCTTAAAAGGAAGATCAATGGCCGAAAGATTGAGTTGGAGATCATACCTGAAGTTGATCTATATAAATGTGAACCATGGGACTTGCCAGGCAAATCATTGTTACCGGGAAAGGATTTGGAGTGGTATTTTTTTAGCCCTCGTGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACGAAATCTGGATATTGGAAGGCGACAGGGAAGGATAGGAAAGTAAATTCACAGACACGGGCAGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCTCATGGCTCTCGTACTAATTGGGTTATGCATGAATATCGTCTTGATGAGAGAGAATGTGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGACTGCAGTGATTACTCCAAAAGTTGGAGGGCATTATGTTAATACTCCCAATGCCAACCAGATTACAGGCTATCAATCATCAAGCATTGAACTATATTCTGAAGGAAGGGGAGAAGATTTAGGTAGCTCAAATTATTCAATGCCGATGGATACATGCTCACCCCACAACGTGGGAAATGAGACTTCTCTCACTATCAGTGGTGGATCAAGGGATCATGGGAATTGGTCACACTTCTCATCAGAAGACCCATTATTTAGTCTTCCAACTTCTTCATTTCCTAATTTTGGAACCATGACATACCCTCCATCCAGGGTGGATATAGCTCTAGAGTGTGCAAGGATGCAGCATAGGTTTACTATGCCTCCTTTGGAGGTTGATGACTTCCCTCAAGTTGGAATCTCAGAGCTGAAAATGACACAAGCCTCCGGTTCGATGCAAGGAAGCAGAACTGAAACGGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCCCAAGAATTGATAAATCAATCTGGCTACTCGCATGAATGGGGTGGCAATGATAATTATGCTCCTCGTGAAGATGATTTTACATTCATGGTTGGCACCAATTACAATCATCTAAATGAAATGAGCTCAATGAGGTATGTTGACAAAACATGGGAAGATGCTAACACAAGGACAATAGAGATCGGAGATGTGGGTGAAGAATTTAAGGCAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGAGAAGATTTAGAAAAGATGGAAGAACAAAAGGTTGTCCCAATAGAGGATATTTCAAGTTTCCAAACTAACAGGGAAGAAAATGAGGTGCAAGAATCTGAGCAACATAGCAACAAGGAACACAATGACACTGAAATCAATGATTTCTCCTTGGGCTTCATCAATGATGATGATCCTAACGAGAACTTCATAGAAGAAGGCAACATGAATGATTATTCAAGTTTTCCAAGCTTTGAGGTCGTTGAGGAAACAAAAGTCAATCATGGAATGCTTGTTTCGACTGGTCAAGTAGCCAAGACATTCTTCCACCAAATAGTTCCTTCACAAACCATCCAAGTTCAACTCAATTCAGTGATGGCAAACAATCATTGTGTAGAGAATGCAGAGGCAATGCTAATGATAATGGAGAACCAAGGGTCTATATTGAGGAAGTTTAGGTCCTATGTTATGGGAAAGCTAACAAAGCCATCAAAAGCAATAGCAAGTGCTGTTGTATTTGTCTTTGCACTTGTGTTGATGCATTGTGCTTATTTGAAGGAAGAAGTGGAAATTTGGAATGAAACATATTGCAGCATAAAGAGAATGAGTCAGTCATCTGAGGTAATCAATTGGAATAAGTCAAATGAGGTTTGGTTTGTTGGTGTCAAAAGTGAGAAAGGATTAAGTGCAGTATTGAAGAAAATAGGCATTTTCCTCACTATATCTTTAGCTCTTTGTACCATGTGGGCTAACCAGAATATGATAGTTAACCCTTGA 1962 0.4052 MAPVLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQTRAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETASGLQDAYALCRVFKKTAVITPKVGGHYVNTPNANQITGYQSSSIELYSEGRGEDLGSSNYSMPMDTCSPHNVGNETSLTISGGSRDHGNWSHFSSEDPLFSLPTSSFPNFGTMTYPPSRVDIALECARMQHRFTMPPLEVDDFPQVGISELKMTQASGSMQGSRTETDILQEILSVAHASQELINQSGYSHEWGGNDNYAPREDDFTFMVGTNYNHLNEMSSMRYVDKTWEDANTRTIEIGDVGEEFKAERMVENLRWVGMSREDLEKMEEQKVVPIEDISSFQTNREENEVQESEQHSNKEHNDTEINDFSLGFINDDDPNENFIEEGNMNDYSSFPSFEVVEETKVNHGMLVSTGQVAKTFFHQIVPSQTIQVQLNSVMANNHCVENAEAMLMIMENQGSILRKFRSYVMGKLTKPSKAIASAVVFVFALVLMHCAYLKEEVEIWNETYCSIKRMSQSSEVINWNKSNEVWFVGVKSEKGLSAVLKKIGIFLTISLALCTMWANQNMIVNP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01401 653 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 398 - -
Cca05g01401 653 MobiDBLite consensus disorder prediction 417 451 - -
Cca05g01401 653 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Cca05g01401 653 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Cca05g01401 653 MobiDBLite consensus disorder prediction 429 448 - -
Cca05g01401 653 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Cca05g01401 653 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 398 - -
Cca05g01401 653 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01401 Cca-Chr5 32399858 32428004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01401 1 643 NAC Transcription Factor Family AT1G65910 43.243 7.82e-161 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca05g01401 NAM 4.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01401 - - gmx:100809019 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01401 05 32399858 32428004 Cca05g01401 05 32399858 32428004 ECH