Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01399 ATGGATGAGGAACAACAAAACCTTGAAAGCTTCTTAACATGGGCATCAGAGCTTGGAATATCAGATTCAACAAGCAACAACCTATCTCAACACTCTCTTTCCTCGTGTTTGGGTTCTTCTCTTTCTGTCTCTCATTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAGGGGAGAAATTGTTCTCAGAGTTCCCAAATATGCTTTAATGACAAGAGAGAGTGTAATGGAAGATAAAAGGCTCTCTGTTGCCGTCAATAAGCACTCTGCTCTCTCCTCAGCTCAGATGTTGATTGTTTGCTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGGTGGCATCCTTACCTCATGCATTTGCCACACACTTATGACGTACTAGCTATGTTTGGTGAATTTGAGAAACGTGCTTTGCAAGTGGACGAGGCAATATGGGTCACGGAAAAAGCTACAGTAAAAGCCAGATCAGAGTGGAAAGAAGCTCATGCTTTGATGGAAGATCTCATGTTTAAGCCCCAGTTTTTAACATTTAAGGCTTGGATTTGGGCTGCTGCAACGATATCTTCTCGAACATTGCATATACCGTGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGCCATCTGATGTTGAGGATTTAGAGCATTTGCTATCTAACACTTCCATCCCTGATTCTATCAAATTGAATGTAGACAACGATATAATGGCAGAGGCAGAACAGCTTGATCCTCATTCTCAGAGATTAACAGATGGTGGGTTTGAGGAGGATATGAATGCATATTGTTTTTATGCCAGGGCACATTACAAGAAAGGAGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTCCTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGAACCTGCTGTATATTCTTCAACTTCATGGTCCAAGGAATCACTCTATATCCATCATAATGGGAAGCCTTCCTTTGCATTACTAACTGCATTGCGGTTGTGGGCAACCCCTCAAAACAAGAGGAGGTCTGTTGGACATCTTGTGTATTCTGGTTCTCAACTGTCTGAAGACAATGAAATTTTCATCATGAAATGGCTGTCAAAAACTTGTGATGCTGTGTTAAAGAATCTGCCAACATCTATTGAGGAAGACTCCTTGCTCCTTAATGCAATGAATAGCAGTGAAGATTTTTTTACTTTCATGGAGATCACAGAGTTTATGTCTTCTAAGGATGAGATTTATACCTTCTTAGAAGCACATAACATAAAGGATGCACATAGTTTTACTGACATAATTTTAACAAGAAAAGCAAGAAGGTCCATGGACAGGTGGAAATTAGCCCTCCAATGGAGGTTCAAGTATAAGAAAGTCCTTGTTGATTGTATCTCTTATTGCAATGAAATACTGAATTCTTTTATGAAATAA 1491 0.4011 MDEEQQNLESFLTWASELGISDSTSNNLSQHSLSSCLGSSLSVSHFPHSGGRGLGAVRDLRRGEIVLRVPKYALMTRESVMEDKRLSVAVNKHSALSSAQMLIVCLLYEMGKGKTSRWHPYLMHLPHTYDVLAMFGEFEKRALQVDEAIWVTEKATVKARSEWKEAHALMEDLMFKPQFLTFKAWIWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPSDVEDLEHLLSNTSIPDSIKLNVDNDIMAEAEQLDPHSQRLTDGGFEEDMNAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPAVYSSTSWSKESLYIHHNGKPSFALLTALRLWATPQNKRRSVGHLVYSGSQLSEDNEIFIMKWLSKTCDAVLKNLPTSIEEDSLLLNAMNSSEDFFTFMEITEFMSSKDEIYTFLEAHNIKDAHSFTDIILTRKARRSMDRWKLALQWRFKYKKVLVDCISYCNEILNSFMK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01399 496 Pfam Rubisco LSMT substrate-binding 343 480 IPR015353 -
Cca05g01399 496 Gene3D - 322 495 IPR036464 -
Cca05g01399 496 ProSiteProfiles SET domain profile. 39 295 IPR001214 GO:0005515
Cca05g01399 496 SUPERFAMILY SET domain 7 313 IPR046341 -
Cca05g01399 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 416 IPR036464 -
Cca05g01399 496 Gene3D set domain protein methyltransferase, domain 1 4 309 - -
Cca05g01399 496 CDD SET_LSMT 50 309 - -
Cca05g01399 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 481 - -
Cca05g01399 496 Pfam SET domain 51 295 IPR001214 GO:0005515
Cca05g01399 496 PANTHER PROTEIN SET DOMAIN GROUP 40 4 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01399 Cca-Chr5 32380874 32384888 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca05g01399 SET 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01399 - - gmx:100787452 867.455