Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01391 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACCCGTGTGGTTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAGATGACACTCCAGCCCTTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACGTTAACGGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCGCCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACACATTTTTCGGGGACAGCCAAAACGTCACCTTCTTACGACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGGGCCAATCGGCCACAAACTGTCATGCCATCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATACATCAAAGCTGTGTACCATACGCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGCGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTACGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGATGGGATGAATCAACGGCAGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCTCTATTTCCCCTCAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCGACTAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGCTCTCAATTCCCTGAGTTTTCAAGGTTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAAATGATCATAACCAGCAGTACCAAGCCATGTTTTCATCTGGTTTGCAGAACTTGGGGACTGGAGATCTAATGAGACAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCTGTATCTTCTAATAATATCCTGCAGCCACAGGCCCAAGTAATGACAGAGAACCTGTCCCAGCACCTCCTTCAGAAAGCACAAAACAATCGAGAAGACCAAACACCGCAGCAGCACAATTATCAAGATACGGTTTTACTTCAAAGTGATCAGCTCCATCAGAGGCAGCACTCTGGTTTACCTTCACCATCATATTCGAAACCAGATTTCTTAGATTCGACCATGAAGTTTTCTGCTTCAGTTTCACCAGGACAAAACATGCTTGGTTCACTTTGTCCTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCACAACAGTCATGGGCTCCAAAGTTTACACCATTGCAGGTCAATGCTTTCAGCAACTCAATGCCACATGTGCAATATTCTGGCAAAGATACCGCAATGGTGCCACCACACTGTAACTCAGACACCCAAAATCCAATTATATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACCGTCCCTCGCTATGCTACCGCATCAGCCGATACTGATGCATCAGCAATGCCATTAGGGGAGACTGGATTCCAGGGTGCTCTATATCCTTGCGTGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACCCCCAAAACCAGACACGAACATTTGTCAAGGTTTATAAATCAGGGTCAGTAGGGCGCTCACTCGACATCTCCCGTTTCAGCAGTTATCACGAGCTGCGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGCGACGACCCGTGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCCGAGGAATCAGGACAAAGGCTGAATAGCACTGGTGCAGATTCTCATGAAATTGTTTCAGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2517 0.4621 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQALNSLSFQGSGLLPWMQQRMDPTLLGNDHNQQYQAMFSSGLQNLGTGDLMRQQMMNFQQPFNYLQQSGNPNPPLQLQQPQAIQQSVSSNNILQPQAQVMTENLSQHLLQKAQNNREDQTPQQHNYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSTMKFSASVSPGQNMLGSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNAFSNSMPHVQYSGKDTAMVPPHCNSDTQNPIIFGVNIDSSGLLLPTTVPRYATASADTDASAMPLGETGFQGALYPCVQDSSELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAEESGQRLNSTGADSHEIVSGLPSIGSLEY 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01391 838 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca05g01391 838 MobiDBLite consensus disorder prediction 810 825 - -
Cca05g01391 838 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Cca05g01391 838 Gene3D - 713 806 - -
Cca05g01391 838 Gene3D - 126 229 IPR015300 -
Cca05g01391 838 Pfam AUX/IAA family 713 801 IPR033389 -
Cca05g01391 838 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 813 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca05g01391 838 MobiDBLite consensus disorder prediction 468 488 - -
Cca05g01391 838 MobiDBLite consensus disorder prediction 807 838 - -
Cca05g01391 838 SMART B3_2 128 230 IPR003340 GO:0003677
Cca05g01391 838 PANTHER AUXIN RESPONSE FACTOR 1 813 - -
Cca05g01391 838 CDD B3_DNA 127 228 IPR003340 GO:0003677
Cca05g01391 838 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Cca05g01391 838 Gene3D - 292 364 - -
Cca05g01391 838 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Cca05g01391 838 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Cca05g01391 838 SUPERFAMILY CAD & PB1 domains 715 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01391 Cca-Chr5 32212978 32226898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01391 98 813 B3 DNA Binding Superfamily AT5G37020 68.407 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca05g01391 AUX_IAA 7.6e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01391 - - gmx:100780393 1599.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01391 05 32212978 32226898 Cca05g01391 05 32212978 32226898 ECH
Cca01g00502 01 6261105 6269459 Cca05g01391 05 32212978 32226898 PCT