Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01374 ATGCTAGCTGCTGCTGCTTCAGCTTCTCGGCACCTTCTTCAACGCGATGCCAACATCGGTGTTTGCAGTGGCAGTGGCAATCGAGTTCGCTCTCTTTTAACTGTTTCTGCCATCACCACAATATACCCAATTCGCACAAAAATATGTCACAGTTACGGTTATGGAATCAGTTTCAATAACCCAAGACACACAAAGTGCCCAAGTTTGCTTTTTGCTGTAAAGGGGTTCCTGTCTGATTCATCATCTTCCAGTTCTCCACATGGCAGAGTTCCCAGACCTCACTTACCACTCCCTAGTTCAACTGTGGATGGGCGAGCATTGTTCTCAACTTCAACTAAAGCTGATGATGGAAGCCAAAGTCAAAGCCAAAAGGCTGCTTCTTCCACCATTGCTAAACCATCCCCACCTCCGGGTGGGCAAGTTGCTGATGTGAAGATCCTTCGTACACTTGCTAGTTACTTGTGGATGAAAGATAATCTCGAATTTCGGTTTCGGGTTGTTGCTGCATTGGGTTTGCTTGTTGGGGCAAAGGTCTTGAATGTTCAGGTTCCTTTCTTGTTCAAGCTTGCAGTTGATTCGTTGACGACTGCCACAGGGAGTGCTGGTGCTATTGCTTCAAATTCAAGTGGGCTGGCTCTTTTTGCAACCCCTGTGGCAGTGTTGATCGGATATGGGATTGCCCGTTCAGGAGCTTCTGCTTTCAATGAACTGCGGACCGCTGTATTTTCTAAGGTAGCACTGCGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTACGGTATCATCTAAGCCGAGAAACTGGTGCATTAAGTAGAATAATTGATCGTGGTAGTCGTGGAATAAATTTCATTCTCTCCTCTATGGTGTTCAATGTAGTTCCCACCATATTAGAGATATGTTTGGTATCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCGTTAATTACTTCCTTATCAGTTGCTGCTTATGTTACTTTTACACTGACTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAAGGCAGATAATGATGCTAGTACAAGGGTTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAACTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACGCAGTCTAGCTTTGTTGAACTTTGGTCAAAATGTTATATTTAGTACTGCTCTTTCAACAGCAATGGTGCTGTGCTCTCATGGGATCATGAATGGCTCGATGACTGTTGGTGATTTGGTGATGGTGAATGGGCTTCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTCTGGTTGACATGAAGGCCATGTTTCAGTTACTTGAGGAAAGAGCAGACATCAGGGATAAAGAGAATGCAAAGCCTCTAAGATTCAACGGGGGGAGAATCCAATTTGAGAATGTACATTTTAGCTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTCATTCTGGAAGTATAAAAATAGATGATCAAGATATTCGAGATGTAACCCTTGAGAGTTTGCGGACATCCATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACAATATTTCATAATATTCACTATGGTCGGCTTTCTGCAACAAAAGAGGAGGTCTATGAAGCTGCTAAGCAAGCAGCAATTCATGACACTATCATGAGTTTTCCTGATAAATTTTCTACTGTTGTGGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCATTCTTAAAAGCACCTGCAATACTGTTGTGCGATGAAGCTACTAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCGTTAAAGTCAGTAGCACGTAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGATCATTGTTTTGGAGAATGGGAAGGTGGTTGAGCAAGGACCCCATGAAGTGCTCTTATCAAAAGCAGGAAGATATGCACAGCTGTGGGGACAGCAAAATAACACGATTGATGCAATTGATACAGCCATCAAGCTGGGTGCATAA 2247 0.4268 MLAAAASASRHLLQRDANIGVCSGSGNRVRSLLTVSAITTIYPIRTKICHSYGYGISFNNPRHTKCPSLLFAVKGFLSDSSSSSSPHGRVPRPHLPLPSSTVDGRALFSTSTKADDGSQSQSQKAASSTIAKPSPPPGGQVADVKILRTLASYLWMKDNLEFRFRVVAALGLLVGAKVLNVQVPFLFKLAVDSLTTATGSAGAIASNSSGLALFATPVAVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGINFILSSMVFNVVPTILEICLVSGILAYKFGAPFALITSLSVAAYVTFTLTITQWRTKFRKAMNKADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLALLNFGQNVIFSTALSTAMVLCSHGIMNGSMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKAMFQLLEERADIRDKENAKPLRFNGGRIQFENVHFSYLTERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDDQDIRDVTLESLRTSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAAKQAAIHDTIMSFPDKFSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVARNRTSIFIAHRLTTAMQCDEIIVLENGKVVEQGPHEVLLSKAGRYAQLWGQQNNTIDAIDTAIKLGA 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01374 748 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 167 464 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca05g01374 748 CDD ABC_6TM_ATM1_ABCB7 169 472 - -
Cca05g01374 748 Gene3D ABC transporter type 1, transmembrane domain 153 488 IPR036640 GO:0005524|GO:0016021
Cca05g01374 748 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 117 739 IPR039421 -
Cca05g01374 748 Gene3D - 489 743 IPR027417 -
Cca05g01374 748 Pfam ABC transporter transmembrane region 169 451 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca05g01374 748 SMART AAA_5 523 709 IPR003593 -
Cca05g01374 748 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 117 739 - -
Cca05g01374 748 SUPERFAMILY ABC transporter transmembrane region 151 477 IPR036640 GO:0005524|GO:0016021
Cca05g01374 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 733 IPR027417 -
Cca05g01374 748 CDD ABCC_ATM1_transporter 498 733 - -
Cca05g01374 748 ProSitePatterns ABC transporters family signature. 635 649 IPR017871 GO:0005524
Cca05g01374 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 732 IPR003439 GO:0005524
Cca05g01374 748 Pfam ABC transporter 514 663 IPR003439 GO:0005524
Cca05g01374 748 MobiDBLite consensus disorder prediction 110 139 - -
Cca05g01374 748 MobiDBLite consensus disorder prediction 110 134 - -
Cca05g01374 748 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01374 Cca-Chr5 32000682 32021844 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01374 336 734 Calmodulin-binding Proteins AT2G36910 37.561 6.83e-66 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01374 K05662 - gmx:100779975 1288.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01374 05 32000682 32021844 Cca05g01374 05 32000682 32021844 ECH