Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01369 ATGTCTGGTTTGTACAATCAAATATCTTCACCTTCAACTAGGGCCAATTCACCAAACATAAACATGAGAAGCAATTTTGATGTTGAAAGTCAGTACTTAACGGAGCTGCTAGCAGAACACCAGAAGCTTGGACCTTTCATGCAAGTCTTACCCTTGTGTACTAGGCTCTTAAATCAAGAGATTTTAAGGGTTTCTGGAAAGAATGGATTGATGCAGAACCAAGGGTTTGGTGACTACGACAGAGTGCAGTTCGGAAGCCCCAAACCCAATCTCATGCCTTCTTTAGACATACAACCAAATTTTACAGGCTGGAACAGCTTATCACATGAAGGGTTAACTGGAGTACAGGGACTACACGTGGATTGGCAAACAGCACCTAGTGTCCCCAACTCTCACATTGTGAAGAAGATATTGCGCTTGGATATTGCTAATGATAGCTATCCAAATTTCAATTTTGTTGGACGGCTTCTTGGCCCTAGGGGTAATTCATTAAAGCGAGTGGAGGCTACCACAGGTTGCCGTGTATATATAAGAGGAAAAGGTTCAATAAAAGAACTTGATAAGGAAGAGCTGTTAAGGGGAAGGCCAGGGTATGAGCACCTGAATGAGCCATTGCATGTTTTGATTGAGGCTGAATTACCTGTCAATGTTGTTGATATAAGGCTGAGGCAAGCACAAGAAATCATAGAAGAGCTACTTAAACCCATGGATGAGTCACAAGACCTCTACAAAAGGCAACAACTAAGAGAACTTGCTATGCTGAATTCCAATTTTAGAGAAGAGAGCCCTCAACTCAGTGCATTTGATGTCAGTTCCTACATGGCCACTGAGGTTAATGCTGACGTGGATGTTGTTGTCCGTGCCAAAAGGATTTCAGCTACCGAGAGTGTCAAAAGGGTTTCGGCTACCAAGGGTGTCGAATGGGTTTTGCCTACCGAGGGTGCCGAGTGGGTTTCGGCTACCGAGGGTGTCGAAGGAGGTTGCATGTCCTTGGAAGGTTTTCGGCCATTGGAGGTGCCAAATGCAACTAGGCCATCGGGGGGCCCGATCGAAATCGACTGCATTTATGCCGAGGGGGTTCCGATTACATTTCAGATTCGCATTCGTTTGTTTGTGTGGCGTCGTTGTGCGGTAGCGAAGAAGATGGGGAAACAGATTGTGCCGGTGAAATCAGTTGTCTACGCTCTCTCCCCTTTCCAGCAGAAGATAATGACCGGTCTCTGGAAGGATTTGCCTACCAAGATTCACCACAAGGTCTCCGAGAATTGGATCAGCGCCACTCTCTTGCTCGCTCCTCTCGTTGGCACCTACACCTATGTTCAGAACTACCTGGAAAAGGAGAAGCTGGCCCACAGggtgaatgcatggaaatctgactTTTTTATGCCATTCAATCTTGAAAATGGGATAGCTGGTATAACAAGCAGGCTTTTCAAACAAGCCCGTCGAATAACAGATTTCTTGTCCAAGCTTCCTGATAAGGTCCGTTTTGGCTTCGACTCTGAGTCTCCTTTTGAGTTTGATCACCATTTTTCCACTACCAGCAACTTAAGTCAAGGAGAGATAAAATACTATGAAAGACAATTTGCTACTCTGAAATCATTTGAAGAAGTTGACTCCATAGTAACATCGGACTGCACTGATGTAGAAGACATTGAAAAACAAGCTCAACATGAACGAGCAATGAAGATTTCAAATTTTGCAAATGCAGCTTTATTGGCATTGAAGATTTATGTGACTATAAGGAGTGGGTCAATAGCTGTTGCAGCATCAACATTGGATTCTTTGCTTGACTTCATGGCTGGTGGCATACTTTGGTTCACCCACCTTGCAATGAAGGATATAAATATGTACAAATACCCAATTGGAAAGTTGAGGGTGCAGCCAGTGGGTATAATTATCTTTGCAGCTGTCATGGCAACACTTGGCTTTCAGGTATTTATCACGGCTGTGCAACAACTAATACTAATAGAAAACAATCCTTCTGAGAAGATGTCTTATGATCAACTAGCATGCTCAGGAAACAAAATTGTCCGTGCATATGCAGATGATCATCACTTTGATGTTGTAACAAATGTGATTGGATTAGTTGCGGCTGTTCTTGGTGATAAATTTTACTGGTGGATTGATCCAGTTGGTGCCATTTTACTTTCAATTTACACTATTACAAATTGGTCTGGCACTGTAATGGAAAATGCAGTGGGACAATCTGCACCTCCCGAAGTTCTGCAGAAGCTGACATATCTTGTCGTAGTGCACTCTCAAATTAAGCGCATTgactgttgggattcatcccaaGTTGACATTGAACTACAAGAGGATTTACCCTTAAAAGAAGCAAATGCCATTGGAGAGAGCCTACAAATAAAGCTAGAAAAACTTGCAGAAGTTGAGCGAGCATTTGTTCATCTAGACTTCGAATGTGATCACAAACCAGAGCACTCAttcatttcacttcactgcaccttcctctcatttcaGATGGCAAAGGGTTGCTCCAACAACGAGTACGAAAAGGCTAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATATCAAAAAATTTGACTGAAATCACAAGTTCTGCAAAGAAGACACTGCATCATCTTCCTAAACTGAAACCAAAGAAGACAAATGGTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGAAACCCAGTTCCTTCATACCGTGAAGATGTGAGCATAGATCTTCCACCTTTGCGGAAGAGGTCGAGGTCAAATTCTTCAACATGGGGAAGTTACGTTGCCAGACCACTAGATGAAATCAAAGAAGCAACAGAAGAGGAAAGACTTCGTGCTCTGCAGGCTGCAGAGGCACTCCAAATCAATTTGAACTCTTCAAACCCATCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAGAACCGTATATGGCATGGTTTTAGAAGATGAAAATGGCTCAGAATACGAGGCTGTTTACATTGGCAACAGAAGTGGGATTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAGGTTCAAGATTTAAGATTTATATTGTTAGAGCATTTCCAGATTCAGTTGAAGAAAAAGGAATGGATATTTTAGAAAAAGAAGGAAATATGCATGAAACCAAAGTATCAAAAGCTGCCTGTAATATTGAATCAGAATCCAAGACAAAAAAACCAAAACAGGCAGCTGTGTATAAAACTACGGAACCAGAGTTTTCTCAGGAGCATCTGCCAGATGGGGTAAATCCAACTAAGAAATCTAAATCTTCCCAGAAAGAAATGCAAAAGACATCAAAAGGGAAAGTGCAAATTAAAACCGACAAATCCAAGGCGGCTGTAAAGCTTTCAAACAAGACAAGGAAGCGAAGACAAGGTATTACAAATGAAATTGGTGACTTAGGCAAGTTAGAGAAGAATGGGTTTGTTCAGGATGCAGCTGATTGCAAATTGGAGAAACTTGAACTAATTCAAGAAGCAACCAAATGTGTGTCACAAAAAGCAAGAAAAAAACCAGCTCCAAAATATTTCAGAAAGAAAGCATAA 3657 0.4096 MSGLYNQISSPSTRANSPNINMRSNFDVESQYLTELLAEHQKLGPFMQVLPLCTRLLNQEILRVSGKNGLMQNQGFGDYDRVQFGSPKPNLMPSLDIQPNFTGWNSLSHEGLTGVQGLHVDWQTAPSVPNSHIVKKILRLDIANDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKELDKEELLRGRPGYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIEELLKPMDESQDLYKRQQLRELAMLNSNFREESPQLSAFDVSSYMATEVNADVDVVVRAKRISATESVKRVSATKGVEWVLPTEGAEWVSATEGVEGGCMSLEGFRPLEVPNATRPSGGPIEIDCIYAEGVPITFQIRIRLFVWRRCAVAKKMGKQIVPVKSVVYALSPFQQKIMTGLWKDLPTKIHHKVSENWISATLLLAPLVGTYTYVQNYLEKEKLAHRVNAWKSDFFMPFNLENGIAGITSRLFKQARRITDFLSKLPDKVRFGFDSESPFEFDHHFSTTSNLSQGEIKYYERQFATLKSFEEVDSIVTSDCTDVEDIEKQAQHERAMKISNFANAALLALKIYVTIRSGSIAVAASTLDSLLDFMAGGILWFTHLAMKDINMYKYPIGKLRVQPVGIIIFAAVMATLGFQVFITAVQQLILIENNPSEKMSYDQLACSGNKIVRAYADDHHFDVVTNVIGLVAAVLGDKFYWWIDPVGAILLSIYTITNWSGTVMENAVGQSAPPEVLQKLTYLVVVHSQIKRIDCWDSSQVDIELQEDLPLKEANAIGESLQIKLEKLAEVERAFVHLDFECDHKPEHSFISLHCTFLSFQMAKGCSNNEYEKARKQRLEENKKRFEDLGISRISKNLTEITSSAKKTLHHLPKLKPKKTNGEVEPRRSSRVRNPVPSYREDVSIDLPPLRKRSRSNSSTWGSYVARPLDEIKEATEEERLRALQAAEALQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPRTVYGMVLEDENGSEYEAVYIGNRSGISGGWRAFALDHKLDDGDALVFELIEGSRFKIYIVRAFPDSVEEKGMDILEKEGNMHETKVSKAACNIESESKTKKPKQAAVYKTTEPEFSQEHLPDGVNPTKKSKSSQKEMQKTSKGKVQIKTDKSKAAVKLSNKTRKRRQGITNEIGDLGKLEKNGFVQDAADCKLEKLELIQEATKCVSQKARKKPAPKYFRKKA 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01369 1218 PANTHER MN-SPECIFIC CATION DIFFUSION FACILITATOR TRANSPORTER MTP8.1 672 823 - -
Cca05g01369 1218 Pfam Cation efflux family 564 660 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca05g01369 1218 Pfam Homodimerisation region of STAR domain protein 29 67 IPR032377 -
Cca05g01369 1218 Gene3D Cation efflux protein, cytoplasmic domain 753 821 IPR036837 -
Cca05g01369 1218 Coils Coil 939 959 - -
Cca05g01369 1218 CDD SF1_like-KH 139 259 - -
Cca05g01369 1218 Gene3D - 381 453 IPR036642 GO:0005750|GO:0006122
Cca05g01369 1218 Coils Coil 835 855 - -
Cca05g01369 1218 Gene3D K Homology domain, type 1 23 265 IPR036612 GO:0003723
Cca05g01369 1218 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 145 259 IPR036612 GO:0003723
Cca05g01369 1218 SMART kh_6 134 234 IPR004087 GO:0003676
Cca05g01369 1218 PANTHER MN-SPECIFIC CATION DIFFUSION FACILITATOR TRANSPORTER MTP8.1 485 671 - -
Cca05g01369 1218 MobiDBLite consensus disorder prediction 1089 1158 - -
Cca05g01369 1218 MobiDBLite consensus disorder prediction 1 21 - -
Cca05g01369 1218 Pfam Cytochrome b-c1 complex subunit 8 382 452 IPR020101 GO:0005750|GO:0070469
Cca05g01369 1218 MobiDBLite consensus disorder prediction 871 903 - -
Cca05g01369 1218 Gene3D - 941 1058 IPR015300 -
Cca05g01369 1218 Gene3D Cation efflux protein transmembrane domain 558 734 IPR027469 -
Cca05g01369 1218 ProSiteProfiles B3 DNA-binding domain profile. 967 1058 IPR003340 GO:0003677
Cca05g01369 1218 CDD B3_DNA 965 1056 IPR003340 GO:0003677
Cca05g01369 1218 Coils Coil 1217 1218 - -
Cca05g01369 1218 SMART B3_2 967 1058 IPR003340 GO:0003677
Cca05g01369 1218 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 485 671 - -
Cca05g01369 1218 SUPERFAMILY Cation efflux protein transmembrane domain-like 557 733 IPR027469 -
Cca05g01369 1218 MobiDBLite consensus disorder prediction 1127 1152 - -
Cca05g01369 1218 SUPERFAMILY DNA-binding pseudobarrel domain 960 1056 IPR015300 -
Cca05g01369 1218 Pfam B3 DNA binding domain 967 1055 IPR003340 GO:0003677
Cca05g01369 1218 MobiDBLite consensus disorder prediction 882 896 - -
Cca05g01369 1218 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 672 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01369 Cca-Chr5 31910695 31939205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01369 837 1057 B3 DNA Binding Superfamily AT5G58280 51.613 2.31e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca05g01369 Cation_efflux 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01369 - - gmx:100786265 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01369 05 31910695 31939205 Cca05g01369 05 31910695 31939205 ECH