Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01368 ATGAACTCATTCATATCAGGATTGTGTCATTTCAAAATGGAGATTTGTCTTTCCATTGCAGCAAAGATTGCAGAATATACAGTGGGTTCGATTATACACCATGGTCGATACCTGTGTTGTTTCCACAACTTTGTTGGGAATCTTCCAATTGCTAAAGAAGAATTGGAATTGACTCGAGACAGCGTGAAGGAACGAGTTAGACAAGCCACTAATAGGACTGAAAAAATTGAACCAAGTGTTGAAAAGTGGCTGAAAGATGTTGAGAAAGTCTTAGAAGAAGTGCAACTACTTGAAGGAAGAATTTTGGAAGCAAGCAAAATCTATTTTAGAAGGCGCGTTTGCATGATTGGACTATTTGGAATGGGAGGTTCAGGAAAAACTAGTTTGGCAAAAGAGGTTGGGAAGAAAGTTGAGGAGTTAAAACTTTTTGAGGAGGTTGTCATGGCAACAATCTCTCAAACTCCAAATATCAGAGGCATCCAAGCTCAAATTGCTGATAAGTTGTGCCTAGAATTTAAAGAAGAATCAGAGGAAGGTAGAGCACAAAGACTATCAAAAAGAATAAGGGAAAGAACAACTCTTGTAATCTTGGATGATGTATGGGAAAAGCTAGACTTTGAAGCTATAGGTATTCCATTTAATAATGAGAACAGCAAGGGTTGTCGAGTACTCCTAACAACTCGGAAAAGAGAAGTATGCATGTCTATGCAATGCCAAAGCATAATTGAGCTCGATCTCTTGACTGATGAGGAATCTTGGACTTTGTTCAAAAAGTATGCAAACTTAACTGATGACTCTCTAGATGTTTTGAAAGATGTGGCAAGAAAAATTGCCGATGAATGCAAGGGATTGCCTATCGCAATTGTTACAGTGGGAAGCACGCTAAAGGGGAAAACTTTTCAAGAGTGGAAGTCAGCATTATCAAGACTAGAAGATTCCATTCCACTAGATATTCCTGATGGCTTAAGAACTACTCATGCATGTCTCAAATTAAGTTATGATAATTTGAAAAATGAATTAGCCAAGTCCTTGTTACTGTTGTGTTCTATATTTCCAGAGGATCATGAAATTGATTTGGAGGATTTATTTCGTTTTGGAAGGGGACTGGGCCTAAATGGAATTTTTGGAACAATGGAAAAAGCAAGGATAGAGATTCATGTAGCTGTTAATATCCTGAGGGATTCTTGTTTGTTGCTGCGTGCCAATAAAAAAGAAAAGGTGAAAATGCATGACATGGTTCGTGATGTAGCCTTGTGGATAGCATCTGAAAAAGGTCAAGCAATTTTGGCAAGTAATACAATGGATCCAAGTAAGTTGGTAGAGGATGAAACCATAAAAGATAAAAAAGCAATATCCTTGTGGGATTTAGAAAATGGTCTGCTTCTTAATGATCAATTGAATTGTCCAACAACTGAAATTATCTTGCTTCATTCTCAAAGGGTTGGCTTTGAAGTATCAAATGCTTGTCTTGAAAGGTCGAAAATGCTTAAAATCCTAGCACTCTTACAATTTGGCTATAAATGTTATTTTTTTTCTTTCGGTTTTTTTTCGTTATCACTACCGCAATCAATGAAGGCACTAAAAAATCTCCGGACTTTGTGCTTGAGAGGATTTGAATTAGGTGACATCTCCATTTTGGAAAGCCTACAAGCACTTGAGATTCTTGACTTGCGTGGTTCTTATTTAGAAGAATTACCTAATGGAATTGTAGCATTAAAGAACTTGAGGCTTTTGGATTTGTACGGTTGTTTGGTTAAGAAAAATAATTCTTATAAGGTTATAAGAGAATGTTTGCAGCTAGAGGAATTGTATTTGTGGTTAGTGTCACCTCAAGAGGACTTTCCACACGATGTCTCTTTCTTCTGTAGATTGCGGAAGTATGTTGTAGTACACAATTATACAGATATTCTCTCTCAGCTACTTTACTATTTGGAAGAGCACAGACCATCTAGAGCTTTATGCATAGATGGTTTTAATGCTCCTGCTCAAAGTTTTATATCACTTCCAATCAATGATTTGTTTGTAAGAGCAAATATCCTTTGTTTGAGCAACCTTGAGGGAGGTTACAAAAATGTAATCCCATCTATGGATTCGCAAGGCATGAATCAGTTGATTCTCCTAATGCTAAGTCGTTGTCGAGACATAGAATGTCTCTTTGAAAGTACTATCACTACAGACACCAATGTTTATATGCTTCAGACTGAAGTTGTGTTCTCCAGCCTAGTTATCATATATCTATATTTTTTGGATAGTCTTTATAAAGTTTTTCATGATCGATGCTCTCTCAAAAATTTAGAAGAGTTATACATAAGTCATTGTCCACAATTGTACAACATATCCTTTCCAAGGAACTCAAAGCTATGCAATCTTAAAGAATTAAGAATAGATTCATGCCCAATGCTAGCTTCTCTCTTTATGCCATCCATTATCCAAACTCTAGTGCTATTGGAACATCTAGAGATATCTGGATGTAGTGAATTGAAGCACATAATAGAAGAAGGGGATGTTGATTACTTTAGAAATCAAAATCATACCTCTTGGACGCTCCCAAAGTTAAGGTATCTTAATGTTGATAACTGCCACAGGTTGGAATATATATTCCATGCGTGTTTCAGTACAGGGCTAGCAAGCTTGGAAAATTTGGTGATCATAAACAACTGCAACTTGAAGTATGTATTTGGAAGTGAAAGGGAACATCATGCTTCAGTGAACCAGCACCAAAGTAGCCATCAAACTGATATTGACATAAATCTTATTGATTTGGATTATCTCGAGTTGAGTAACTTACCAAATCTCATTGACATTTGGCCTGATTACTACCATTCACGTTTACCAAATACGAAAAGGTTACAATGTTTTGCGTGTCCAAAATTGTTTGACTCTACTGTGCGTAAGTTGGCGAATGATTCAGCTTTGCACCGAGACACAACTACAATGGAGAAGGAGATACTATGGCCGATTACCATTGGGTTCAACCAATTGCGCGATCAGATGTTTTCCTTCGAACTTAAAGTTGTCTTCCTTGATTGTATTGGAATAAAAGGTGTTTTTCAATTCCAAATCGAAGAACCTAGGAGCAACATAGAACTAGTTCCCTTGAACATGGATCTAGAACATATCAGCTTGACAGATCTACTTGAGCTCAACTTTATATGGAAGGGCCCGACAAATTTTCTAAGCCTCCAAGTGCTTCAATATTTTTATCTGAGCGCATGTCCTAAATTGAAAACCATCTTCTCCCCTACCATTGTTAGAAGCTTTCCAGTGCTAACCGACCTCAGAATATTTGACTGTGAGAAATTGGAGCAAATATTTGATTTAGGTGATGCACAAGAACAAAAAGTCCTACATACTTGTTCCCAAAAAGTGTGCTTCCCAAAACTCAAGAACATTGAAGTTCAAAAATGTAACAAGTTGAGATGCCTTTTTTATAATTTTGTGGCAAGTGATTTTCCCATTTTGACCACTTTGGAAATAAAAGAGTGCTCTCAGTTAGACAAGGCTTTTGCTTTTGAACGTGAAACTGATGATGATGGTCAAGAAGGAGAACATGTACTACTACAAAACCTGAGAGATATAAAGCTTGCAAGTTTGCCAAACTTCAAAGACATTCACCAAGAATTTAAGTTAAAAGATGATGTTAATCAAACCATAAAGGATTGTCCTAAATATTCTCCAAGTTTATATCTATACCCAGGCACAACTGATAGGTGA 3714 0.3675 MNSFISGLCHFKMEICLSIAAKIAEYTVGSIIHHGRYLCCFHNFVGNLPIAKEELELTRDSVKERVRQATNRTEKIEPSVEKWLKDVEKVLEEVQLLEGRILEASKIYFRRRVCMIGLFGMGGSGKTSLAKEVGKKVEELKLFEEVVMATISQTPNIRGIQAQIADKLCLEFKEESEEGRAQRLSKRIRERTTLVILDDVWEKLDFEAIGIPFNNENSKGCRVLLTTRKREVCMSMQCQSIIELDLLTDEESWTLFKKYANLTDDSLDVLKDVARKIADECKGLPIAIVTVGSTLKGKTFQEWKSALSRLEDSIPLDIPDGLRTTHACLKLSYDNLKNELAKSLLLLCSIFPEDHEIDLEDLFRFGRGLGLNGIFGTMEKARIEIHVAVNILRDSCLLLRANKKEKVKMHDMVRDVALWIASEKGQAILASNTMDPSKLVEDETIKDKKAISLWDLENGLLLNDQLNCPTTEIILLHSQRVGFEVSNACLERSKMLKILALLQFGYKCYFFSFGFFSLSLPQSMKALKNLRTLCLRGFELGDISILESLQALEILDLRGSYLEELPNGIVALKNLRLLDLYGCLVKKNNSYKVIRECLQLEELYLWLVSPQEDFPHDVSFFCRLRKYVVVHNYTDILSQLLYYLEEHRPSRALCIDGFNAPAQSFISLPINDLFVRANILCLSNLEGGYKNVIPSMDSQGMNQLILLMLSRCRDIECLFESTITTDTNVYMLQTEVVFSSLVIIYLYFLDSLYKVFHDRCSLKNLEELYISHCPQLYNISFPRNSKLCNLKELRIDSCPMLASLFMPSIIQTLVLLEHLEISGCSELKHIIEEGDVDYFRNQNHTSWTLPKLRYLNVDNCHRLEYIFHACFSTGLASLENLVIINNCNLKYVFGSEREHHASVNQHQSSHQTDIDINLIDLDYLELSNLPNLIDIWPDYYHSRLPNTKRLQCFACPKLFDSTVRKLANDSALHRDTTTMEKEILWPITIGFNQLRDQMFSFELKVVFLDCIGIKGVFQFQIEEPRSNIELVPLNMDLEHISLTDLLELNFIWKGPTNFLSLQVLQYFYLSACPKLKTIFSPTIVRSFPVLTDLRIFDCEKLEQIFDLGDAQEQKVLHTCSQKVCFPKLKNIEVQKCNKLRCLFYNFVASDFPILTTLEIKECSQLDKAFAFERETDDDGQEGEHVLLQNLRDIKLASLPNFKDIHQEFKLKDDVNQTIKDCPKYSPSLYLYPGTTDR 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01368 1237 Gene3D - 53 244 IPR027417 -
Cca05g01368 1237 Gene3D - 333 418 IPR036388 -
Cca05g01368 1237 Gene3D Ribonuclease Inhibitor 509 634 IPR032675 -
Cca05g01368 1237 Coils Coil 52 72 - -
Cca05g01368 1237 Coils Coil 80 100 - -
Cca05g01368 1237 Gene3D Ribonuclease Inhibitor 674 915 IPR032675 -
Cca05g01368 1237 Gene3D Ribonuclease Inhibitor 917 1173 IPR032675 -
Cca05g01368 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 347 IPR027417 -
Cca05g01368 1237 PRINTS Disease resistance protein signature 811 827 - -
Cca05g01368 1237 PRINTS Disease resistance protein signature 187 201 - -
Cca05g01368 1237 PRINTS Disease resistance protein signature 115 130 - -
Cca05g01368 1237 PRINTS Disease resistance protein signature 281 295 - -
Cca05g01368 1237 PANTHER DISEASE RESISTANCE PROTEIN-RELATED 22 1111 - -
Cca05g01368 1237 Pfam NB-ARC domain 114 335 IPR002182 GO:0043531
Cca05g01368 1237 PANTHER DISEASE RESISTANCE PROTEIN RP 22 1111 IPR044974 GO:0006952
Cca05g01368 1237 Gene3D - 246 332 IPR042197 -
Cca05g01368 1237 SUPERFAMILY L domain-like 408 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01368 Cca-Chr5 31904548 31910123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01368 116 583 WRKY Transcription Factor Family AT5G45050 24.078 4.71e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01368 - - ccaj:109817714 2193.7