Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01367 ATGTATCTTTCAAAGGTTTGTAGGTGTGAAGTTGTTCTCTGCTTGTGGTTTTGCTGCTATTTCCTATTGGCTGCCGGTCAGGTCACTGACCCCACAGAAGTTGACGCATTGAGAGCCATAAAGAGCAGTTTGATTGATATTAATGGAAATTTGAGCAGCTGGGATCGTGGAGACCCATGTACATCTAACTGGACAGGGGTTATGTGCTCCAATACAACATTAGACAATCGCTACCTGCATGTTCTACAATTGCAACTACTGAATTTGAACTTGTCTGGAACTTTGGCACCAGAGATTGGCAACTTATCTCACCTAAAAATATTGGACTTTATGTGGAATAACATAAGTGGGAGTATACCAAAGGAGATTGGTAATATCAAAACTTTGGAACTTTTACTCCTGAATGGAAATAAACTAATTGGTCATCTGCCAGAAGAGCTTGGCCATCTTCCGGTGTTGGACAGAATACAAATTGACGAGAACCAAATAACAGGACCCATACCATTATCATTTGCAAACCTGAACAGCACAAAACACTTTCACATGAACAACAATTCACTTACTGGACAAATCCCACCACAGCTTTCCCAATTAGGAAGCCTTATGCACCTTCTTCTTGACAGCAATAACTTAACAGGATATCTCCCATCCGAGCTCTCTGAGATGCCAAGCTTAATGATACTTCAACTTGATAACAATAACTTCAGTGGAAATAGCATTCCAGAATCTTATGGCAACATGTCAGGATTGGTGAAATTGAGTCTTAGGAACTGCAACTTACAAGGACCAATTCCTGATTTCAGTAAGATACCACACCTTTCTTATCTTGACCTCAGTTTGAATCATTTGAATGAATCAATTCCGACCAATAAACTGTCAGACAATATCACAACCATTGACTTATCAAAGAACAATCTTAATGGAACAATTCCATCCAACTTTTCTGGTCTTCCACGGCTTCAGAAATTGTCAATTGCAAACAATTCATTGAGTGGCATCGTTCCTTCTACCATTTGGCAGGAGAGGACTTTAAATGGAAGAGAACAACTTATCTTGGACATGCAAAATAATCAACTTACAGGCATATCAGGCACTACAAATCTTCCTCCAAATGTCACACTCATGCTTGAGGGAAATCCTGTATGCAAAAATAATAACTCCTTAGTTGCGTTCTGTGGACCTGAAAGTGACAATGGCTTGAATGGAGGCTCCAATGTTGACTGTCCCAGTCAAGCATGCCCCCCTCCTTATGAATACACTGTGCAGTGTTTCTGTGCTGCCCCGTTGGTTGTTCATTATCGGTTGAAGAGTCCAGGATTTTCAGATTTCAACGCATACATGAGTTCATTTGAGAGCTTCTTGTCAGATGGTCTTAATGTGCATAGTAATCAGCTGTTCATTGAGCGTTTTGCTTGGGAGGAAGGGCGGTTGAGAATGAACTTGAAGCTTTTTCCTGAATATATTGACAATAGAAGTTCTCATGTGTTCAACACAAGTGAGGTTGTTCGGATCAGAGACTTGTTCAGAGAATGGAACATTGATGACAATGACTTGTTTGGGCCTTATGAACTTCTGAACTTCATTCTACTGGATCCTTACAGGGATGTGATTACCCGCTCTCCAAGTTCAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCTTAGGTGCAATTGCCTGTGCAGTTACATTATCTGCAATTGTTTCCATTCTTATTTTGAGAATACGATTGAGAGATTATCGTACACTTTCCAAACGGCGTAATGCATCTAGGATATTGATAAAAGTTGATGGTGTGAGATCATTGGATTTCAAAGAAATGGCCttggctacaaacaattttagtgagtctgctcaaattggagaagggggctatggaaaggtttataaaggtcatctttctgatggcactgttgttgccataaaacgtgcacaggagggttcactgcaaggtcagagggagttccttacagaaatagaattgctatccaggttacatcatcgcaaccttgtctcgctgataggattctgtgatgaAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCACAAGGAACACTAAGGGATCACCTTTCTGCTTATTCAAAAGAACCTCTTAGTTTTTCCATGAGGTTGAGGATTGCTCTAGGATCAGCCAAAGGTCTTTTAtatctacacacagaagctaatcctccaatattccaccgagatgtcaaggccagtaatatattattggactctaggtacacagcaaaagttgctgattttggactttcaCGGCTTGCCCCAGTTCCTGATACTGAAGGAAATGTACCTGGTCATGTATCAACAGTGGTAAAGGGAACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGCAATTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTGTTTCTGGAACTTGTGACTGGGAGGCCACCAATCTTCCATGGCGAAAATATTATTAGACAGGTTAATATGGCATACCAATCTGGTGGGATATCTTTGGTTGTTGATAAACGCATTGAGTCTTACCCTATTGAGTATGCAGAGAAATTTTTGACTTTGGCCTTAAAATGTTGCAAAGATTCACCACATGAGAGGCCTAAAATGGCAGAAGTAGCTAGAGAGCTTGAATACATTTGTTCTATGTTACCTGAGTCAGATACCAAGGGAACTGAATATGGTACAAGTGATTCTTCTGGTACAATATTCAGTTCACAACCTTCATCATCTACTATAAAGACTCCTTTCATTTCAGGAGATGTGTCGGGTAGTGATCTTGTTAGTGGAAGTATACCAACCATCAAGCCAAGATAG 2835 0.3587 MYLSKVCRCEVVLCLWFCCYFLLAAGQVTDPTEVDALRAIKSSLIDINGNLSSWDRGDPCTSNWTGVMCSNTTLDNRYLHVLQLQLLNLNLSGTLAPEIGNLSHLKILDFMWNNISGSIPKEIGNIKTLELLLLNGNKLIGHLPEELGHLPVLDRIQIDENQITGPIPLSFANLNSTKHFHMNNNSLTGQIPPQLSQLGSLMHLLLDSNNLTGYLPSELSEMPSLMILQLDNNNFSGNSIPESYGNMSGLVKLSLRNCNLQGPIPDFSKIPHLSYLDLSLNHLNESIPTNKLSDNITTIDLSKNNLNGTIPSNFSGLPRLQKLSIANNSLSGIVPSTIWQERTLNGREQLILDMQNNQLTGISGTTNLPPNVTLMLEGNPVCKNNNSLVAFCGPESDNGLNGGSNVDCPSQACPPPYEYTVQCFCAAPLVVHYRLKSPGFSDFNAYMSSFESFLSDGLNVHSNQLFIERFAWEEGRLRMNLKLFPEYIDNRSSHVFNTSEVVRIRDLFREWNIDDNDLFGPYELLNFILLDPYRDVITRSPSSGISKGALAGIILGAIACAVTLSAIVSILILRIRLRDYRTLSKRRNASRILIKVDGVRSLDFKEMALATNNFSESAQIGEGGYGKVYKGHLSDGTVVAIKRAQEGSLQGQREFLTEIELLSRLHHRNLVSLIGFCDEEGEQMLVYEYMPQGTLRDHLSAYSKEPLSFSMRLRIALGSAKGLLYLHTEANPPIFHRDVKASNILLDSRYTAKVADFGLSRLAPVPDTEGNVPGHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELVTGRPPIFHGENIIRQVNMAYQSGGISLVVDKRIESYPIEYAEKFLTLALKCCKDSPHERPKMAEVARELEYICSMLPESDTKGTEYGTSDSSGTIFSSQPSSSTIKTPFISGDVSGSDLVSGSIPTIKPR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01367 944 Pfam Protein kinase domain 615 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01367 944 Pfam Leucine rich repeat 295 341 IPR001611 GO:0005515
Cca05g01367 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Cca05g01367 944 MobiDBLite consensus disorder prediction 896 936 - -
Cca05g01367 944 Gene3D Ribonuclease Inhibitor 186 293 IPR032675 -
Cca05g01367 944 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cca05g01367 944 ProSiteProfiles Protein kinase domain profile. 614 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01367 944 SUPERFAMILY L domain-like 43 393 - -
Cca05g01367 944 CDD STKc_IRAK 620 884 - -
Cca05g01367 944 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 918 - -
Cca05g01367 944 Gene3D Phosphorylase Kinase; domain 1 585 689 - -
Cca05g01367 944 SMART serkin_6 614 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01367 944 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 918 - -
Cca05g01367 944 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Cca05g01367 944 SUPERFAMILY Protein kinase-like (PK-like) 600 894 IPR011009 -
Cca05g01367 944 Gene3D Ribonuclease Inhibitor 294 384 IPR032675 -
Cca05g01367 944 MobiDBLite consensus disorder prediction 896 944 - -
Cca05g01367 944 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Cca05g01367 944 Gene3D Transferase(Phosphotransferase) domain 1 690 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01367 Cca-Chr5 31880919 31896756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01367 18 896 Receptor kinase-like Gene Family AT5G01950 58.119 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca05g01367 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01367 - - gmx:100801035 1511.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01367 05 31880919 31896756 Cca05g01367 05 31880919 31896756 ECH
Cca01g00541 01 6787895 6799842 Cca05g01367 05 31880919 31896756 PCT