Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01364 ATGGCAGAGGTTACTTTGAATTCAAGTGTCAATATCTTATACCTTACAACCAAAAAACGCTCCATGAAGTTCTACTCCCCTCTAATGCACCCTTTCCTTTTCATCATTGTTATTCTTTGTCCTATGGTTATTGCTGACTTAAGTTCTGATAAGCAAGCCCTTCTTGATTTTGCTTCTGCTGTCCCCCATCGCCGGAACCTTAAGTGGGATCAAGCTACCCCTATCTGTACATCTTGGGTAGGCATCACTTGCAATCCAAATGGCACTCGTGTTGTTTCTGTCCGACTCCCTGGAATTGGACTAGTCGGCACCATCCCTGCCAACACAATTGGAAAGATTGACTCACTAAAAAATATCAGCCTCCGTGCCAACTTACTCAGTGGAAGTCTTCCTCCTGATATTACCTCTCTTCCTTCTCTACAATATCTCTACCTTCAGCATAATAATCTTTCTGGTGACATACCTACCTCATTGTCCACCCACCTCAATGTACTTGATTTGTCATACAATTCCTTCACCGGTGCTATTCCAAAGACATTACAAAACCTAACACAACTAACTAGATTGAACCTCCAGAACAACTCCCTATCTGGACATATTCCAAATCTCAATGTCACTAAGCTCAGGCATTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTGCTGCTCTTCAGATTTTCCCAAATTCTTCCTTTGAGGGTAACTCTCTATGCGGATTACCTCTAAAATCATGCTCTATAATCTCCCCCACTCCTCCCTCGTCAACTCCTGCCCCATCATCACCTCCGGCAAGACATAACTCCAAAAATAAATTGAGTAAGGTAGCTATCATTGCAATTGCTGTTGGTGGGGGCGTGCTATTACTTTTTGTAGCTCTTGTCATTGTTCTTTGCTGTTTAAAGAAAAAAGATGATGGAAGCCCCAGAGTAGCTAAAGCCAAGGGTCCTAGTGGTGGGAGAAGTGAGAAGCCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCATACAAGGCTATATTGGAGGAGTCAACAACCGTTGTGGTGAAAAGGCTGAAGGAAGTTGTGGTAGGCAAAAGGGAATTTGAACAGCAGATGGAGATTGTGGGAAGGGTTGGACAGCACCCAAATGTTGTGCCACTTCGTGCTTATTATTATTCCAAGGACGAGAAGCTTTTGGTTTGTGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCACGGTAACAGGGCAAGTGGAAGAACTCCATTAGATTGGAACTCCCGAATAAAAATCTCTGCTGGAATTGCCAGAGGAATTGCTCACATACATTCTGTTGGGGGTCCAAAATTCACACATGGAAATGTCAAATCCTCGAATGTCCTCCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTCACCCCGCTTATGAATGTTCCTGCAACCCCTTCTAGAGCCGCAGGTTATCGCGCTCCGGAGGTGATTGAAACCCGTAAGCACACAcacaagtcagatgtgtacagttttggtgtccttcttctggaaatgcttaccgggaaagcgccaCAACAGTCTCCAGGACGGGATGACATGGTTGATCTCCCCAGGTGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATTTGAGGCCTAGCATGGAGGATGTAGTGAGAATGATCGAAGAGATCCGGCTATCTGATTCGGAAAACCGGCCATCTTCGGAAGAGAACAGATCCAAGGAGGAATCAGCTGCGCAAACTCCATAG 1968 0.4304 MAEVTLNSSVNILYLTTKKRSMKFYSPLMHPFLFIIVILCPMVIADLSSDKQALLDFASAVPHRRNLKWDQATPICTSWVGITCNPNGTRVVSVRLPGIGLVGTIPANTIGKIDSLKNISLRANLLSGSLPPDITSLPSLQYLYLQHNNLSGDIPTSLSTHLNVLDLSYNSFTGAIPKTLQNLTQLTRLNLQNNSLSGHIPNLNVTKLRHLNLSYNHLNGSIPAALQIFPNSSFEGNSLCGLPLKSCSIISPTPPSSTPAPSSPPARHNSKNKLSKVAIIAIAVGGGVLLLFVALVIVLCCLKKKDDGSPRVAKAKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVGRVGQHPNVVPLRAYYYSKDEKLLVCDYIPSGNLSTLLHGNRASGRTPLDWNSRIKISAGIARGIAHIHSVGGPKFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDLRPSMEDVVRMIEEIRLSDSENRPSSEENRSKEESAAQTP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01364 655 Pfam Leucine Rich Repeat 207 227 IPR001611 GO:0005515
Cca05g01364 655 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
Cca05g01364 655 Gene3D Ribonuclease Inhibitor 49 160 IPR032675 -
Cca05g01364 655 MobiDBLite consensus disorder prediction 630 655 - -
Cca05g01364 655 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Cca05g01364 655 Gene3D Ribonuclease Inhibitor 161 249 IPR032675 -
Cca05g01364 655 MobiDBLite consensus disorder prediction 307 335 - -
Cca05g01364 655 ProSitePatterns Protein kinases ATP-binding region signature. 365 396 IPR017441 GO:0005524
Cca05g01364 655 MobiDBLite consensus disorder prediction 630 649 - -
Cca05g01364 655 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Cca05g01364 655 ProSiteProfiles Protein kinase domain profile. 359 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01364 655 Gene3D Transferase(Phosphotransferase) domain 1 435 653 - -
Cca05g01364 655 SUPERFAMILY Protein kinase-like (PK-like) 363 637 IPR011009 -
Cca05g01364 655 SUPERFAMILY L domain-like 60 252 - -
Cca05g01364 655 Pfam Protein kinase domain 362 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01364 655 PANTHER OS05G0588300 PROTEIN 15 655 - -
Cca05g01364 655 PANTHER LRR RECEPTOR-LIKE KINASE 15 655 - -
Cca05g01364 655 CDD STKc_IRAK 365 630 - -
Cca05g01364 655 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01364 Cca-Chr5 31815316 31817553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01364 17 653 Receptor kinase-like Gene Family AT5G58300 68.323 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g01364 Pkinase 5.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01364 - - gmx:100818344 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01364 05 31815316 31817553 Cca05g01364 05 31815316 31817553 ECH
Cca01g00544 01 6848254 6852842 Cca05g01364 05 31815316 31817553 PCT