Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01361 atgcaagatccatcttcaaaccctaattccaatccaaatcccaatccTCACAATGCCACTGCCGCATCCCAATTACCACGTccgccgccgtccacggcggccaccgccgccgccgccggcacctcctcctccTCATTATTCCCGCGCCCCGGCGGCTCTCACCACCGGCGAGCCCACTCCGAGGTAAGTTTCCGGCTGCCGGACGACATGATGGACCTGTCGCCGTCCGATCCGTTCGCCGGCGGGTCGTCGACGGCGAGCATGGAGGAGATCGGATCGGAGGACGACCTGTTCTCGACGTACATTGACGTGGGCAAGTTCGGCGGCGCCAACGGATCCGGCGGCGGCGGAAACGGCGCAGATCCGAACAGCGAACTTGAGAAGAGTCCGGCGAGGCCGCGGCACCGGCACAGTAGTTCAGTCGATGGTTCTTCGTCGTTCGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAATTGATCCCAAGCGTGCCAAGAGAATACTTGCGAATCGGCAATCTGCTGCTCGTTCAAAAGAGAGAAAAGCACGATATATACAAGAACTTGAGCGCAAGGTTCAGACTCTTCAAACGGAAGCCACAACTCTTTCTGCCCAATTGACATTGTACCAGAGGGACACAACGGGCCTGAGCACTGAAAATACAGAGCTTAAGCTCCGTCTGCAAGCTATGGAGCAACAAGCACAGCTTCGTGATGCTCTTAATGAAGCATTGAAGAAGGAAGTTGAGAGACTTAAGGTTGCTACTGGTGAGATAATGAGCCACACTGAATCCTTTAATCTGGGAATGCACCAGATGCCATTTACAGGATCAAATTTTGTTCCAATCCCGCCACAATCAGGTCCTCCTGGTCACCAGAATATCCAGATGCCACCATTTGGTCATTCCCCATCCACAATGGCAACTCATCAAATGCATCAAACAAGTTCTCACCCACTTTCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGTCTTGACATTAGTAGCAAAGGATCAACTCTCGTGAAGTCTGAAGGCCCCTCACTTTCTGCAAGTGAAAGTAGCACCACATTTTGA 1110 0.4694 MQDPSSNPNSNPNPNPHNATAASQLPRPPPSTAATAAAAGTSSSSLFPRPGGSHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVGKFGGANGSGGGGNGADPNSELEKSPARPRHRHSSSVDGSSSFGEIMEAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEIMSHTESFNLGMHQMPFTGSNFVPIPPQSGPPGHQNIQMPPFGHSPSTMATHQMHQTSSHPLSEILQNDQLGRFQGLDISSKGSTLVKSEGPSLSASESSTTF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01361 369 Pfam bZIP transcription factor 171 226 IPR004827 GO:0003700|GO:0006355
Cca05g01361 369 Gene3D - 170 222 - -
Cca05g01361 369 MobiDBLite consensus disorder prediction 349 369 - -
Cca05g01361 369 CDD bZIP_plant_RF2 172 221 IPR044759 GO:0003700|GO:0006355
Cca05g01361 369 PANTHER ATBZIP TRANSCRIPTION FACTOR 6 366 - -
Cca05g01361 369 SUPERFAMILY Leucine zipper domain 171 222 IPR046347 GO:0003700|GO:0006355
Cca05g01361 369 SMART brlzneu 167 231 IPR004827 GO:0003700|GO:0006355
Cca05g01361 369 Coils Coil 187 214 - -
Cca05g01361 369 MobiDBLite consensus disorder prediction 1 147 - -
Cca05g01361 369 MobiDBLite consensus disorder prediction 306 326 - -
Cca05g01361 369 MobiDBLite consensus disorder prediction 292 326 - -
Cca05g01361 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 169 232 IPR004827 GO:0003700|GO:0006355
Cca05g01361 369 Coils Coil 235 266 - -
Cca05g01361 369 MobiDBLite consensus disorder prediction 1 49 - -
Cca05g01361 369 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01361 Cca-Chr5 31756597 31759503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01361 1 369 bZIP Transcription Factor Family AT2G40620 50.000 4.59e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca05g01361 bZIP_1 6.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01361 - - gmx:100815680 553.132