Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01359 ATGGAGTTTGAGGTTTGCATGAACATTTGGTGCCAGGATAACGCTTCTCGTGAATGGAAGCAAGGGTGGCCTCTAAGATCGGCTGGATTTGCTAGACTCTGCGAGGAGTGCGGATCTGCCTATGCCAATTCAATTTTCTGTGAAACATTCCACAAGCATCAAGCTGGTTGGAGAGAGTGCAACGATTGCGGCAAGCCTATCCACTGTGGATGCATTGTATCGAGGTCTTTGTTTGAGTACCGTGATTCTGGCGGTATAGATTGTGTTACCTGTGCACAGGCTTCCCAACTTCGTTTGATGCGGGCAACTGAAAACCTCAATGCTGTTAGATCAATAAAAAATAATGCAAATGATCGTCACACTGAACATATTGACGGTAGACTAATGGTGGATGGTGCTGGCAAAGGAAAAATGGTGCAACTGTGTAGAATTGTCGAAGCTAGTGAACCCAGCCGTTGGCCTCAATCAGAAAGAGAGGTGATAGATTCATGCAATGGTCTAAACAAGCAAGATGATACAAGATTTTCAAATGTGATGAAACCGCCTAGCCATTCATTAGCAATAACTACATCAGAAAATAATGGACCAACATGGGTGACTGGAAGTATGGACAAATCACATCCACTGAATATTTCTATAGGAACCTCATCAGGAAATTCTGTCCTGACTTCTGCTCTAGAGAGTTTGGAAGAGAGACTTGAGGGTAAAGCATTGTCTTCTCCCTTTCATCAAGGCCAAAGGTCTCTCTCCATGAAAATGGAAGGGCTGATTCCTCCTCAGGAACGCATTGCCAGGCCACCTGCTGATGGGATTGGCAAGAGTCTGTTACTTTCTCGATACTGGCCAAAGATGACTGATCATGAGCTGGAGAAATTGTCGGAGTGTATGAAGTCTATTGTAGTGCCATTATTTGAGAAGACACTGAGTTCCAGTGATGCTAGTCGAATTGGTCGTCTTGTTCTCCCAAAATCCTGTGCTGAGGTTTACTTTCCTCCTATTACACAGTCAGAAGGTCTTCCTCTGCAGATGCTAGATGTTATGGGAAATGAGTGGATATTTCAGTTCAGATTCTGGCCTAACAACAATAGTAGAATGTATGTGTTGGAGGGAGTAACCCCTTGCATGCAGGCCTTGCAATTAAATGCTGGTGATACTGTGATATTTAGTCAGATGCATCCTGGAGGCAAATATGTTTTCGGTTTCAGAAGGGCATCAGGTTCTACAGATACACAGGAAGCAAACTTATCTGGTGCAACTGCAAATCTTCGCTCAGGAAGTAGTTATCATAATCTTCTCCTGAACTGGAAAAGGAAGAGAGAAGCTTTCTTAAATGGATGTTCAGAACATTTGCGTTGGGGCATTGCTAGTCTTCAAACTGAAAATTGTGACATGGTAAACAATGATTTGTTGCAGCTGCCACCAATTTCAGTTTCAGAGAGGATGACTCAAACTACTGGGCCAAAGAGGTTGCTCCCACCTAATGATGACGCTACGGAGTTGAGAGTTACATTGGAAGAAGCACAGAACTTGCTTAGTCCGCCACCTAAGGTCAAGCCAGGTATTATAAAAGTTGAGGATCAAGAATTTGAGGAATATGAGGAACCCCCGGTTTTTGGAAAGAGAACTGCAATCAATGCACATCCATTAGGATCTCTAAACTCTGCATCAAAGGAAATGAGTCCAAAGGAATTAGATAATATTCTGACAACCAGCAAAGATTTAAAAAAGCGAAGAAGCATAAGAAAACCTGACACAGCTCAAGAACATGAGCCTCATGGCTTGAATGCACTAGCCAGCGCTGCAGCTTTGGGTGATGACCTTGTTGAGCCTGTTGGAGCCACCACGAAGCATCCGAGGCACCGTCTTGGATGCAGCTGCATCGTATGCAGCCAGCCCCCAAGTGGTAAGGGGAAACACAAGCCTACGTGCACATGCATTGCCTGCGTGACCATGAAGCGCAGGTGCAACACCCTCATGGCTCGTAAGAGGAAACGTGGCCAATCAGATGATGATGCTCTCGCTCGGGATGAAGGAGACACAAATGGTGCACCCAGAGATCAAATAGATCTCAATTCGCATCCATATCCCGAAGACATGCAGGTGGATGCATGA 2112 0.4484 MEFEVCMNIWCQDNASREWKQGWPLRSAGFARLCEECGSAYANSIFCETFHKHQAGWRECNDCGKPIHCGCIVSRSLFEYRDSGGIDCVTCAQASQLRLMRATENLNAVRSIKNNANDRHTEHIDGRLMVDGAGKGKMVQLCRIVEASEPSRWPQSEREVIDSCNGLNKQDDTRFSNVMKPPSHSLAITTSENNGPTWVTGSMDKSHPLNISIGTSSGNSVLTSALESLEERLEGKALSSPFHQGQRSLSMKMEGLIPPQERIARPPADGIGKSLLLSRYWPKMTDHELEKLSECMKSIVVPLFEKTLSSSDASRIGRLVLPKSCAEVYFPPITQSEGLPLQMLDVMGNEWIFQFRFWPNNNSRMYVLEGVTPCMQALQLNAGDTVIFSQMHPGGKYVFGFRRASGSTDTQEANLSGATANLRSGSSYHNLLLNWKRKREAFLNGCSEHLRWGIASLQTENCDMVNNDLLQLPPISVSERMTQTTGPKRLLPPNDDATELRVTLEEAQNLLSPPPKVKPGIIKVEDQEFEEYEEPPVFGKRTAINAHPLGSLNSASKEMSPKELDNILTTSKDLKKRRSIRKPDTAQEHEPHGLNALASAAALGDDLVEPVGATTKHPRHRLGCSCIVCSQPPSGKGKHKPTCTCIACVTMKRRCNTLMARKRKRGQSDDDALARDEGDTNGAPRDQIDLNSHPYPEDMQVDA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01359 703 CDD B3_DNA 302 403 IPR003340 GO:0003677
Cca05g01359 703 SUPERFAMILY DNA-binding pseudobarrel domain 302 403 IPR015300 -
Cca05g01359 703 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 553 702 - -
Cca05g01359 703 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 550 - -
Cca05g01359 703 MobiDBLite consensus disorder prediction 660 703 - -
Cca05g01359 703 MobiDBLite consensus disorder prediction 571 589 - -
Cca05g01359 703 SMART B3_2 304 405 IPR003340 GO:0003677
Cca05g01359 703 Coils Coil 99 119 - -
Cca05g01359 703 Gene3D - 282 408 IPR015300 -
Cca05g01359 703 MobiDBLite consensus disorder prediction 571 593 - -
Cca05g01359 703 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 553 702 - -
Cca05g01359 703 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 550 - -
Cca05g01359 703 ProSiteProfiles B3 DNA-binding domain profile. 304 405 IPR003340 GO:0003677
Cca05g01359 703 MobiDBLite consensus disorder prediction 662 683 - -
Cca05g01359 703 Pfam B3 DNA binding domain 304 404 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01359 Cca-Chr5 31739997 31746678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01359 3 694 B3 DNA Binding Superfamily AT4G32010 40.239 1.01e-166 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca05g01359 B3 9.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01359 - - ccaj:109795166 1425.22