Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01357 atgacttatgtcaaccagATTGCACCATTTGATCCTACCaagaagaagaagaagaagaaAATTACAATTGTGGATCCTGATGATGACCCAGTCGAAAAATTGGCTGAGAAGACAGAAAACCTCTCAGTTGCTGATGGAGTTGAGACTGCATTTACTGGTTTgaaaaagaagaagaagaagCCTGTTGAAATCAGTAACTTGAATGATGAGAGTGGAGATGCCATTGAAGATTTGGATGATCACGCTGAAGATGATGAAGGAGAAACAGTTGCTCCCCAGGCTCGTTATCCTTGGGAAGGGAGTGATCGTGATTATGAATACGAGGAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCTGAACTTGCTGGAGATCGGCGGAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTCGTGAATTTTATGGATCTGTGCAAAACAATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAGCTGGGTACAAGTGGCTCCCTTGATGGTCAGCAGAGATTGGTTGTGAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATATGTCATTTGCCTTGGATGTAAGAGTCCGGACACTATACTTACCAAGGAAAATCGTCTCTTCTTCCTCCGGTGTGAGAAGTGCTATCTAGAAATTGTGTTATGCATGATTCTCATTTGTTTTTCACTTGCAGTTGCTGATGGAGTTGAGACTGCATTTACTGGTTTgaaaaagaagaagaagaagCCTGTTGAAATCAGTAACTTGAATGATGAGAGTGGAGATGCCATTGAAGATTTGGATGATCACGCTGAAGATGATGAAGGAGAAACAGTTGCTCCCCAGGCTCGTTATCCTTGGGAAGGGAGTGATCGTGATTATGAATACGAGGAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCTGAACTTGCTGGAGATCGGCGGAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTCGTGAATTTTATGGATCTGTGCAAAACAATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAGCTGGGTACAAGTGGCTCCCTTGATGGTCAGCAGAGATTGGTTGTGAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATATGTCATTTGCCTTGGATGTAAGAGTCCGGACACTATACTTACCAAGGAAAATCGTCTCTTCTTCCTCCGGTGTGAGAAGGTAAATTTTCTATACACTTTTGCTTGTTTCTCTTCTTCCTTCCTCTTTTAG 1380 0.4159 MTYVNQIAPFDPTKKKKKKKITIVDPDDDPVEKLAEKTENLSVADGVETAFTGLKKKKKKPVEISNLNDESGDAIEDLDDHAEDDEGETVAPQARYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILTKENRLFFLRCEKCYLEIVLCMILICFSLAVADGVETAFTGLKKKKKKPVEISNLNDESGDAIEDLDDHAEDDEGETVAPQARYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILTKENRLFFLRCEKVNFLYTFACFSSSFLF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01357 459 PANTHER BNAA02G05130D PROTEIN 271 445 - -
Cca05g01357 459 Pfam Domain found in IF2B/IF5 129 235 IPR002735 GO:0003743|GO:0006413
Cca05g01357 459 Pfam Domain found in IF2B/IF5 338 443 IPR002735 GO:0003743|GO:0006413
Cca05g01357 459 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 271 445 IPR045196 GO:0003743|GO:0006413
Cca05g01357 459 PANTHER BNAA02G05130D PROTEIN 6 236 - -
Cca05g01357 459 MobiDBLite consensus disorder prediction 280 295 - -
Cca05g01357 459 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 104 211 IPR016189 GO:0003743|GO:0006413
Cca05g01357 459 MobiDBLite consensus disorder prediction 70 86 - -
Cca05g01357 459 Gene3D - 102 240 - -
Cca05g01357 459 Gene3D - 311 448 - -
Cca05g01357 459 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 236 IPR045196 GO:0003743|GO:0006413
Cca05g01357 459 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 208 236 IPR016190 GO:0003743|GO:0006413
Cca05g01357 459 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 417 445 IPR016190 GO:0003743|GO:0006413
Cca05g01357 459 SMART eIF2Bneu4 129 238 IPR002735 GO:0003743|GO:0006413
Cca05g01357 459 SMART eIF2Bneu4 338 455 IPR002735 GO:0003743|GO:0006413
Cca05g01357 459 MobiDBLite consensus disorder prediction 58 92 - -
Cca05g01357 459 MobiDBLite consensus disorder prediction 280 301 - -
Cca05g01357 459 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 313 420 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01357 Cca-Chr5 31685816 31693128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01357 249 458 Eukaryotic Initiation Factors Gene Family AT5G20920 78.774 1.28e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01357 K03238 - gmx:100783618 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01357 05 31685816 31693128 Cca05g01357 05 31685816 31693128 ECH