Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01354 ATGTCCGTACACTCAACACTCAAGCTCCACCCCATGAACCTCTCAACCCCAAGCTCCAATTTTGACGACGACCCACCATGCAAAGCCACCCCCAAAACCCAAGGGAAGCTCCTTCGGATCATCCTCACAGACCACGACGCCACCGATTCCGACTCCTCCGACGaagaacaagaacaaccaaaagaaacaagaaaagtcaagagacaaATCACCCAAATCAACATGCGAATCCCTCTCTCGTATAACtccttttcttcttcctcttcttattcctctgcttctgcttccacttgttcttcAGAACAACTCCACAAGAGACCCAAAAAACTgccgccgtcctccgccgcgggccgccgccgGAGCAAGTTCCGCGGCGTCCGGCAGCGGCCAGCCGCCGTGAAGCTCAAGGGTCCCAACGCCGTCACGAACTTCCCTCTGGCGCCGCCGGCGCCGTCGTCCCCGGTGGTCGTCGTGGACAGCTTCAGCACCGACGGCGGCGCGTCGTACTCCGACCTGGTGGCCTCGCCGACGTCCGTGCTGACCTTCGACTCGACGCCGTTCGACGGTTTCCGTTACGGCGACGTGGACGCGTTCGGGTTCCGAATCGACGCGCCGTTAAGTTTGCCGGACGTTGACGTTGCGCTGACGTGTCATCACGGGAAGGATGAAGAGGCGTTCGGCGAATTCGACCTCGACGAGTTCATAACGTGGCCTTACTAA 720 0.4944 MSVHSTLKLHPMNLSTPSSNFDDDPPCKATPKTQGKLLRIILTDHDATDSDSSDEEQEQPKETRKVKRQITQINMRIPLSYNSFSSSSSYSSASASTCSSEQLHKRPKKLPPSSAAGRRRSKFRGVRQRPAAVKLKGPNAVTNFPLAPPAPSSPVVVVDSFSTDGGASYSDLVASPTSVLTFDSTPFDGFRYGDVDAFGFRIDAPLSLPDVDVALTCHHGKDEEAFGEFDLDEFITWPY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01354 239 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 131 234 - -
Cca05g01354 239 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 31 130 - -
Cca05g01354 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 131 234 - -
Cca05g01354 239 MobiDBLite consensus disorder prediction 45 70 - -
Cca05g01354 239 PIRSF PTI6 7 132 IPR017392 GO:0003700
Cca05g01354 239 PIRSF PTI6 131 239 IPR017392 GO:0003700
Cca05g01354 239 MobiDBLite consensus disorder prediction 111 129 - -
Cca05g01354 239 MobiDBLite consensus disorder prediction 1 31 - -
Cca05g01354 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 130 - -
Cca05g01354 239 MobiDBLite consensus disorder prediction 97 130 - -
Cca05g01354 239 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01354 Cca-Chr5 31630893 31632227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01354 28 184 AP2-EREBP Transcription Factor Family AT4G27950 30.500 4.79e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01354 K13434 - gmx:100800489 277.33