Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01352 ATGGTTAAGGCAGCACTATGCATGTGGGGGATTGTGGATAAAAAGGCAAAGAATGCGATCATTCCTAAAGCCAAGAATTGGGGCATGAATGAATCAGCAACCATAAATGGTTCTCATCATTGCTTGTTCAAGTCCTATCATCATTCATCAAATGCCTATCATCCATACACGCTTTTACCTTGGATTGTCAAATCTATGGGGGGTCAATTCATCCGATGCAACAGATCAAGGAAGAGAAATGGTTCTCATGTTATGAAGAGTAAAGTGTCCTCACCAACAACATCTCAAAGGTCGCAGCCAAGGTATTCACACTATTTCTCCACTGAGCCGATAAGAGCTGGGAAGCTATACAACACTCCTATTCACACCAAGGACTTGGACATGCCATTCAATGATTCACCTAGAAGGTCTTCCAAGAGAAGGGCTAGGAGAAAAACCATTTACAAGCCTTCTCCCACTGTTGTCTCCTCCTCTTTCATACCTGCTTCCAGCTATGACTCCACCAATCACTGGATCAAGCCATGTCAAATTCAGTCACCATATTATGATGTATCTTCAGTTGAAAGCTCTTCTGAATCCGACCCCCATGAATATGTTTATTCCGAGTCTGAATGTGACAATTTTTCTGTTCCTGACTTGCTCAATGGAATGGCCTCTAACTGCAGTTGCAGAGTTAGCTCTTCCACTAATGACATCATCATTGACATGAACAATGAGTCCTTCCTTGGGAACTTTGAAAAGCAAGATAGGTTTGATGCAATTTCACAGCTAGGACTTGCTCCAATATTGACAAAGCCAGTGAAGTATGATGATAAGATCATTGAAGCCATTGAGTTGAGAAGTTCAACAGATTTGGATGAGCTGCAGGATGATCAATCTTTCTCAATTGAAATAAACAAAGAGGAAAGCAATAGAACTCAAAGGAGGAGAAAAAGCAGCCACAGAAAGCCCTTTGCTAATTCTGCAGGCATAAAGCTTCGAGTCAATTCTCCAAAACTTGCAAGCAGAAAAATTCAAGCCTCTGCAAGGAGGAGTGTGTCATCTACTGCAAGCAAAGCTTCAAGAAGTACAGGATTTCCGGATGGATTTGCTGTTGTTAAGTCCTCATTTGATCCACAGAGTGACTTCAGGGAGTCAATGGTGGAGATGATTGTGGAGAACAATATTCGGGCATCGAAAGATTTGGAGGACTTACTTGCTTGCTACCTTTCCCTCAATTCAAGTGAATACCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGACATGGCTCAACGCAGAATGTAA 1293 0.4161 MVKAALCMWGIVDKKAKNAIIPKAKNWGMNESATINGSHHCLFKSYHHSSNAYHPYTLLPWIVKSMGGQFIRCNRSRKRNGSHVMKSKVSSPTTSQRSQPRYSHYFSTEPIRAGKLYNTPIHTKDLDMPFNDSPRRSSKRRARRKTIYKPSPTVVSSSFIPASSYDSTNHWIKPCQIQSPYYDVSSVESSSESDPHEYVYSESECDNFSVPDLLNGMASNCSCRVSSSTNDIIIDMNNESFLGNFEKQDRFDAISQLGLAPILTKPVKYDDKIIEAIELRSSTDLDELQDDQSFSIEINKEESNRTQRRRKSSHRKPFANSAGIKLRVNSPKLASRKIQASARRSVSSTASKASRSTGFPDGFAVVKSSFDPQSDFRESMVEMIVENNIRASKDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDMAQRRM 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01352 430 MobiDBLite consensus disorder prediction 85 103 - -
Cca05g01352 430 MobiDBLite consensus disorder prediction 298 318 - -
Cca05g01352 430 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 363 425 IPR006458 -
Cca05g01352 430 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 74 429 IPR038933 GO:0045892
Cca05g01352 430 MobiDBLite consensus disorder prediction 76 103 - -
Cca05g01352 430 ProSiteProfiles OVATE domain profile. 365 424 IPR006458 -
Cca05g01352 430 Pfam Transcriptional repressor, ovate 369 425 IPR006458 -
Cca05g01352 430 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 74 429 - -
Cca05g01352 430 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01352 Cca-Chr5 31613801 31616570 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca05g01352 Ovate 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01352 - - gmx:100780926 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01352 05 31613801 31616570 Cca05g01352 05 31613801 31616570 ECH
Cca01g00583 01 7402418 7403552 Cca05g01352 05 31613801 31616570 PCT