Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01347 ATGCCGGAGACCGAAAACGCGGCGGAGAGCGGCGCCCTGTTCGGAAAATACGAGGTGGGGAGACTCCTAGGATGCGGGGCGTTCGCGAAGGTGTACCACGCGCGGAACACGGAAACGGGGCAGAGCGTGGCTGTGAAAGTGATAAGCAAGAAGAAACTAAACTCCTCGGGTTTGGCCTCCAACGTGAAGCGCGAGATCTCAATCATGAGCCGCCTCCGCCACCCCAACATCGTCAAACTCCACGAAGTGTTGGCCACCAAAACCAAAATCTACTTCGTCTTGGAGTTCGCCAAAGGCGGCGAGCTTTTTGCCAGAATCGCCAAGGGCCGCTTCGGGGAGAATCTCGCCAGGCGCTATTTTCAGCAGCTTATCTCCGCCGTGGGTTACTGCCACGCGCGCGGGGTTTTCCACCGCGACCTGAAGCCGGAGAATCTCCTCGTGGACGAGAGCGGGAACCTTAAAGTCTCCGACTTTGGGCTGAGCGCGGTGAAGGAGCAAGTGGGGGTGGATGGGTTGCTGCACACGCTTTGCGGGACCCCTGCTTACGTGGCGCCGGAGATTTTAGGGAAGAAGGGTTACGATGGGGCCAAGGTTGATGTTTGGTCGTGTGGGATTATTCTCTTTGTGCTTGTCGCTGGCTACCTTCCGTTTAACGACCCCAATTTGATGGTCCTGTATAGGAAGATTTACAAAGGGGAGTTTCGGTGTCCGAGGTGGTTTTCGGTGGAGTTAAGGATGCTATTGGCCAAGTTGTTGGACACGAATCCCGAGACGAGGGTAACCGTGGATGGGATCATGAAGGACTCGTGGTTTAAGAAGGGGTATAAGGAGGTTAAGTCTGAGGATTCGAGTGTGAAGAGGGATGCGGGTGAGGGAGAAAGTGAAAGTGAAAGGGTGAAGGATTTGAATGCGTTTGATATTATTTTGTTTTCTTCCGGGTTGAATCTCTCGGGTTTGTTTGATTCTTCTTCGTGTGGGGAAGAGGGGGAGAGGTTTCTGCTTAGGGAGGCGCCGGAGAAGGTGGTGGAGACGGTGGCGGCGGCGGCGGCCGCGGAGGGGGTTGTTGTGCGGCGGAGGAAGGAGTTCGGGGTGGAGTTGGAGGGGTGTGGGGGTAATTTCGCGGCTTTGGTGGAGGTTTACCGGTTACCGGGGGAGCTGGTGGTGGTGGAGGTGAAGAGGAGCGATGGGGACGGTGCGGTTTTTAGGGATGTGTGGAGGAATAAGCTGAGGCCCTATCTTTGTGCTGCGAGTAGCAGTACGACGTCGGATCGGGAGGGGACTGGGGCGCAGCCGGTTGCCGGTTCATCATGA 1311 0.5645 MPETENAAESGALFGKYEVGRLLGCGAFAKVYHARNTETGQSVAVKVISKKKLNSSGLASNVKREISIMSRLRHPNIVKLHEVLATKTKIYFVLEFAKGGELFARIAKGRFGENLARRYFQQLISAVGYCHARGVFHRDLKPENLLVDESGNLKVSDFGLSAVKEQVGVDGLLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGIILFVLVAGYLPFNDPNLMVLYRKIYKGEFRCPRWFSVELRMLLAKLLDTNPETRVTVDGIMKDSWFKKGYKEVKSEDSSVKRDAGEGESESERVKDLNAFDIILFSSGLNLSGLFDSSSCGEEGERFLLREAPEKVVETVAAAAAAEGVVVRRRKEFGVELEGCGGNFAALVEVYRLPGELVVVEVKRSDGDGAVFRDVWRNKLRPYLCAASSSTTSDREGTGAQPVAGSS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01347 436 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01347 436 SUPERFAMILY Protein kinase-like (PK-like) 14 278 IPR011009 -
Cca05g01347 436 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Cca05g01347 436 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01347 436 Gene3D Kinase associated domain 1, KA1 298 416 - -
Cca05g01347 436 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Cca05g01347 436 Pfam NAF domain 301 357 IPR004041 GO:0007165
Cca05g01347 436 Gene3D Transferase(Phosphotransferase) domain 1 99 278 - -
Cca05g01347 436 PANTHER - 5 425 - -
Cca05g01347 436 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 425 - -
Cca05g01347 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cca05g01347 436 CDD CIPK_C 303 414 - -
Cca05g01347 436 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cca05g01347 436 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01347 Cca-Chr5 31530556 31532572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01347 1 422 CBL-interacting serine-threonine protein kinases AT2G30360 62.156 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca05g01347 Pkinase 6.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01347 - - gmx:100815088 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01347 05 31530556 31532572 Cca05g01347 05 31530556 31532572 ECH
Cca01g00586 01 7454766 7456253 Cca05g01347 05 31530556 31532572 PCT