Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01345 ATGCTATCTTGTTTTGTGCTTACTTCAAAGTTTTCTATGGAGAACACATCAAATATCTTATTGCAAAAATATGAACTGGGAAGGTTACTAGGCCAAGGCACGTTTGCAAAGGTTTACTATGCACGTAGTACAATAACTAACCAAAGTGTGGCTATTAAAGTGATTGACAAGGATAAGGTTATCAAAACTGGACAAGTTGATCATATCAAACGCGAAATATCTGTCATGAGGCTGGTCAAGCATCCAAATATCATTGAGCTTTTTGAGGTCATGGCCACCAAGAGTAAGATTTACTTTGTTATAGAATATGCTAAAGGTGGAGAGCTGTTTAAGAAAGTGGCCAAAGGAAAGCTTGAAGAAGAAGTTGCACACAGATATTTCAGGCAGCTAGTGAATGCAGTAGATTTTTGTCACAGTAGAGGTGTATACCACAGAGACATAAAGCCGGAGAACATTCTATTGGATGAAAATGAGAATTTGAAGGTCTCAGATTTCGGGTTAAGTGCCCTGGCTGAGTCCAAACGGCAAGATGGCTTGTTGCACACAACTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCCAAAGCTGACATTTGGTCTTGTGGGGTAGTTTTGTTTGTCTTGTTGGCTGGTTATATTCCTTTTCAAGATCCGAATTTGATGGAGATGTATAGGAAAATAAGTAAGGCAGAGTTTAGATGTCCTAGTTGGTTCCCAAAAAGGGTTCAGAGGCTGTTGAGCAAGATGTTGGATCCGAATCCGGACACTAGGATTTCTATAGATAAAATTAAGCAATGTTCTTGGTTTAGGAAGGGACCAAATGGTGGACAGATAACTCAAAGGAAAAACAGGAGTATCTCTTCATCGGTTACAAATCATTGTGAACAATGTGGTGATGAAAGTCATAGTTTAGCAGCAGAAGCACAGCAAGAGCCAATTGTGCCGGCTAGTATAAATGCTTTTGATATCATCTCCCTTTCACCTGGTTTTAATCTTTGTGGTTTCTTTGAAGACAGTTTTCAAAAAAGGGAAGCAAGATTTACAACAAGACAACCAGCATCAGTCATTATCTCTCGACTAGGAGAAATCGCAAAGCGGCTGAAGCTGAAAATAAAGAAAAGGGCTGCAGGTTTGTTGAAATTGGAGGGCTTTCAAGAAGGTAGAAAAGGGATTTTATCCATTGATGCAGAGATCTTTGAGGTCACTCCACTTTTGCATTTAGTGGAGGTGAAGAAATCAAATGGAGATACATTGGAATATGAGAAAATATTGAAAGAGGACATAATGCCTGCTCTTAAAGATGTTGTTTGGATTTGGCAAGATGACCAAGAACATTCACAACAGTTGGAGCAACAGCAGCAACAACAATCAGAGTCATAA 1407 0.3952 MLSCFVLTSKFSMENTSNILLQKYELGRLLGQGTFAKVYYARSTITNQSVAIKVIDKDKVIKTGQVDHIKREISVMRLVKHPNIIELFEVMATKSKIYFVIEYAKGGELFKKVAKGKLEEEVAHRYFRQLVNAVDFCHSRGVYHRDIKPENILLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFQDPNLMEMYRKISKAEFRCPSWFPKRVQRLLSKMLDPNPDTRISIDKIKQCSWFRKGPNGGQITQRKNRSISSSVTNHCEQCGDESHSLAAEAQQEPIVPASINAFDIISLSPGFNLCGFFEDSFQKREARFTTRQPASVIISRLGEIAKRLKLKIKKRAAGLLKLEGFQEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEDIMPALKDVVWIWQDDQEHSQQLEQQQQQQSES 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01345 468 PANTHER - 14 461 - -
Cca05g01345 468 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Cca05g01345 468 Gene3D Transferase(Phosphotransferase) domain 1 14 326 - -
Cca05g01345 468 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01345 468 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 14 461 - -
Cca05g01345 468 SMART serkin_6 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01345 468 Pfam NAF domain 324 382 IPR004041 GO:0007165
Cca05g01345 468 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cca05g01345 468 ProSiteProfiles Protein kinase domain profile. 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01345 468 SUPERFAMILY Protein kinase-like (PK-like) 20 279 IPR011009 -
Cca05g01345 468 CDD STKc_SnRK3 23 277 - -
Cca05g01345 468 CDD CIPK_C 328 442 - -
Cca05g01345 468 Gene3D Kinase associated domain 1, KA1 327 447 - -
Cca05g01345 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01345 Cca-Chr5 31504274 31506993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01345 13 453 CBL-interacting serine-threonine protein kinases AT5G58380 65.784 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca05g01345 Pkinase 3.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01345 - K07198 gmx:100779316 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01345 05 31504274 31506993 Cca05g01345 05 31504274 31506993 ECH
Cca05g01345 05 31504274 31506993 Cca01g00590 01 7479319 7482177 ECH
Cca07g01725 07 43346196 43350123 Cca05g01345 05 31504274 31506993 ECH
Cca01g00590 01 7479319 7482177 Cca05g01345 05 31504274 31506993 PCT