Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01343 ATGTTTGGACATCCAGAGATAGATAGATTAGATGAGATAACAAAGGTCAGAGCAGAGGGAGAAGCATCTGCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGACAACCTTAAACACTGTAACCCCTTGTGCTGCATGCAAGCTTCTGAGAAGAAGATGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAGTTTGCAGCAGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCTAAGATGCTAATGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCTTGGTTTATGAAGCTAACTTGAGGCTGAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCTCTACAAGCAGAACTAAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAAGCTGCAAGTCTCCTTTCTTCTCATCATGCTGCTTTAGTTTCTTCTGCTGATGCTATATCTGCAGCAATTCCTGCAGACTCACAAGGTCTTTCTCATCCTCCTCCTCCAAAACCATTACCTTCTCCTCCACCAAAACCATTTCCTTCTCCTCCTGTTATCCTTTCATCCTTGTCTTCATCTTCAACTTCTTCTGTCTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 723 0.4288 MFGHPEIDRLDEITKVRAEGEASAQMGRKHFYGPTPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIRAEILKYKYREAASLLSSHHAALVSSADAISAAIPADSQGLSHPPPPKPLPSPPPKPFPSPPVILSSLSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01343 240 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Cca05g01343 240 MobiDBLite consensus disorder prediction 181 203 - -
Cca05g01343 240 PANTHER LOB DOMAIN PROTEIN 27 239 - -
Cca05g01343 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 27 239 - -
Cca05g01343 240 MobiDBLite consensus disorder prediction 204 240 - -
Cca05g01343 240 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Cca05g01343 240 Coils Coil 124 151 - -
Cca05g01343 240 MobiDBLite consensus disorder prediction 177 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01343 Cca-Chr5 31468139 31469499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01343 24 158 AS2 family AT2G30340 79.412 1.04e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca05g01343 LOB 8.1e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01343 05 31468139 31469499 Cca05g01343 05 31468139 31469499 ECH